Daucus carota (carrot): 108205380
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Entry
108205380 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108205380 isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108205380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108205380
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108205380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
Zn_ribbon_RanBP
YdfZ
Motif
Other DBs
NCBI-GeneID:
108205380
NCBI-ProteinID:
XP_017230811
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All DBs
Position
1
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AA seq
729 aa
AA seq
DB search
MPRKVKFGVDHDDDDEYDMYDDDYDDCGDDYDYEDDTPRVEEKGVESRTKHVSIDSAIWR
CPICTYDNEDNMPCCDICGVFRNPLVKSGSNSNINSVGGICKDSGVSVMAKSLFASLPHT
KKGATIQPEKVEILAKEDNNTYKPGNTKGLFHDINKTFSSSNYYKFKKAPFKFDVPSPDD
LVSTGMRSSRLGSKVADSKLSTSQVPSRARDSSKNSCEPLVTTKQSGAPSIVSKTNSKRA
ENDALTSLEGREKKSLSDNLNHMSLNVNSEKLKDVNGERATSQSQYKPEKWMLPNQSEDS
LSQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKDAKNQGKGSFAYAWALDEST
EERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFIPNMISGATQADAAVLVIDASPGSFE
VGIDSTGGQTREHAQLIRSFGVDQLIVAINKMDGVEYSKDRFNMIKQQLGTFLRSCGFKD
SSLYWIPLSAIENQNLVASASDVRLSSWYNGPCLLDTINSIQPPTRDYSKPLRMPICDFI
KSQSQGQGSASGKLEAGALRSGSKVLLMPSGDIGVVRSIERDSQPCVVARAGDNVALSLQ
AIEGSRVKTGDVLCHPDFPVAVAKHLELKVLILDVTTPILAGSQLEFHVHHAKEAARVVK
ILSLLDSKTGKVTKKAPRCLLSKQSAVVEVVTQETVCVEEFSSSKSLGRVFLRSEGRTVA
VGVITRIIE
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaagtgaaatttggagttgatcatgacgacgatgatgaatatgacatgtat
gatgatgattatgatgactgtggtgatgactatgattatgaggacgatactcctcgcgta
gaagaaaagggcgtagaatctagaacaaaacatgtcagtattgattcagccatatggcgt
tgccccatatgtacatatgataatgaggacaacatgccttgttgtgatatatgtggagtt
tttcgtaatcctctggtgaaaagtggtagcaacagcaatatcaattcagttggtggcata
tgcaaagattccggagtttccgtaatggccaaatctctatttgcatcattgccgcacaca
aaaaagggtgcaacaattcaaccagagaaagttgaaattttggcaaaagaggacaataat
acttacaagcctggaaacaccaaaggactatttcatgatatcaataagacctttagctct
tcaaactattacaaatttaaaaaagcccctttcaagtttgatgttccatctccagatgac
ttagtatccacagggatgcgttcttcaagattaggttctaaagtcgctgatagcaagtta
tcaacttcacaagttccttcaagagctagggactccagcaaaaatagttgtgaaccactg
gtaacaactaaacaatctggcgccccatcaattgtttcaaaaactaatagcaagagagca
gaaaatgatgctcttacgtcacttgagggaagggagaaaaaaagtctatcagataacctg
aaccatatgtcattgaatgtaaactctgaaaagttgaaggatgtaaatggtgaaagggct
acgtcacagtctcaatataaacctgagaaatggatgctgcctaatcagtcagaagatagc
ttaagtcaacttaatctggctattgttggccatgttgattccggaaagtcaacgctctcg
ggaaggttactacatcttttaggtcgaatatcccagaagcaaatgcacaaatatgaaaag
gatgcgaaaaatcaagggaaggggtcatttgcttatgcttgggccctggatgaaagcact
gaagagcgtgaaaggggaataactatgacagtggctgttgcctattttgatacaaaaaag
tatcatgttgtgctgcttgactctccagggcataaagattttattcctaatatgatatct
ggggcaacacaagcagatgctgcagttcttgttatagatgcctcaccaggttcttttgaa
gtaggaattgacagtactggaggacaaacacgggagcacgcacaacttattagaagtttt
ggtgttgatcaattaatagttgcaattaataagatggatggcgtggaatactctaaggac
cgtttcaacatgatcaaacagcaacttggaacatttctccgctcttgtggttttaaggat
tcttccctgtattggattccattaagtgcaatagaaaaccagaatttggttgcatcagct
tctgatgtacgcctgtcgtcctggtataacggaccttgtctgttggatacaattaattct
attcaacctcctactagagattattcaaagcctctgcggatgcccatatgcgattttata
aaatcacaatcacaaggacaggggtcggcaagtgggaaattagaggctggagctcttcga
agcggatcaaaagtcttacttatgccatcaggagatataggggttgttcgttccattgaa
cgtgactcccagccttgtgttgttgcaagggctggagataatgtagctctaagtttgcaa
gctattgaagggagtcgggtaaagactggggatgtgttatgtcatcctgattttcctgta
gcagttgcaaagcatttggagctgaaggttcttatactggatgtcaccacccctattctt
gctggctcacagttggagtttcacgtacatcatgcaaaggaggctgcaagagtagtgaag
atattgtcgctgcttgattccaagaccggaaaagtgactaagaaagcaccacgatgtcta
ctatcaaagcagagtgctgtagtagaggtggttacgcaagaaacagtttgcgtcgaggag
ttttcaagtagtaagtctctggggagggtgttcctaagatcagaaggaagaacagtggct
gttggcgtaataactcggataatagagtag
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