Daucus carota (carrot): 108205410
Help
Entry
108205410 CDS
T05350
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03030
DNA replication
dcr03420
Nucleotide excision repair
dcr03430
Mismatch repair
dcr03440
Homologous recombination
dcr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108205410
03420 Nucleotide excision repair
108205410
03430 Mismatch repair
108205410
03440 Homologous recombination
108205410
03460 Fanconi anemia pathway
108205410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dcr03000
]
108205410
03032 DNA replication proteins [BR:
dcr03032
]
108205410
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108205410
Transcription factors [BR:
dcr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108205410
DNA replication proteins [BR:
dcr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108205410
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108205410
MMR (mismatch excision repair)
108205410
DSBR (double strand breaks repair)
HR (homologous recombination)
108205410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
tRNA_anti-codon
zf-CCHC_3
zf-CCHC_5
zf-CCHC_2
CDC24_OB3
DUF223
Motif
Other DBs
NCBI-GeneID:
108205410
NCBI-ProteinID:
XP_063942058
LinkDB
All DBs
Position
1:51012677..51017629
Genome browser
AA seq
948 aa
AA seq
DB search
MVNLSGGSVDMICNSKDKHVDINPILQVQDVRIVQTTNSASERYRLLLSDGVFTVQGMLA
TQNNDLVKANKLVKGSVVKLNEFVCNRIQTRVIIIIVNLDLVLEQCETIGDPKPYPPIVD
GPAKPSPASNISHSGNSNNPQYHNGNSVGAGLMPNNENVGVGSYMQAPGQGRSSGPPLYN
SSLGSKAESGQYNQTTSGFGYSNTESATGISRSPMNNHVRPIQPAYPQVPPMYGNRGPIA
KNGAPPRIIPIAALNPYQGRWTIKARVTAKGALKRYSNQRGEGKVFSFDLLDSDGGEIRA
TCFNAAADQFYHQIEDGKVYLISKGTLKPAQRNFNHLPNDHEIMLDSSSTVEPCFEGEHS
IPQQRFQFRSVAEIEGIENNTVIDVIGVLCSISPSSPIMRKNGTETLKRALHIKDMSGRS
VEVTLWGDFCNAEGQTLQNICDSGVFPVLAVKSAKVSDFNGKAVGTIPTSKVIIEPDIPE
AHNLKAWMETDGKNAQVSSISRETAIGRQDVRKTISQIKDEKLGTSEKPDWITVAATLSY
LKTDNFCYTACPLKIGERQCNKKVINNGDGTWRCERCDQSVEECDYRYILQFQIQDHTGL
TWVTGFQEIGDEIFGIPAKDLYMMKNEDQDDEKFSEYVRKILFNKYLFKLKVKEETFSDE
QRVKSTVVKVDKLNFVSETRGLLDLLNKLQGVDSSSVALKSENSVLNTGTNNAAYGSFGI
KESAHPKVNYTGNVSSAGQGIGLPASQVGQFGNQNVGSRLASTGPTNAYMMCSTCGGMDH
SSNNCPAAMDVQEHSYGGGFNNQTIPAGSGSTGGGGSGSGQCYKCHEHGHWANNCPNARS
GLPGYGSGNVSTSAGGGGNGGECFKCHQNGHWAKDCPSAGGVTSGYGSGNVSASAGGGGN
GGECFKCHQSGHWAKDCPSAGGATAGYGSGNVSSGRYGSASKQYVGGY
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatttgtcaggagggtcagttgatatgatatgcaacagcaaagataagcatgtg
gatatcaacccaatacttcaagttcaagatgtgaggattgtgcagaccactaattcagct
tctgagaggtacagattgttgctgtctgatggggttttcactgttcaggggatgcttgct
actcagaacaatgatctggtgaaggctaataagctggtgaaagggtctgtggtgaagctc
aatgagtttgtttgtaatcgcatccagactcgagtgataattataattgtcaatctggat
ttggtactagagcagtgtgagacaattggtgatccaaaaccatatccaccaatagttgac
ggtccagcaaaaccttccccggcttctaacataagtcacagcggaaattctaataatcct
caatatcacaatggaaattcagttggtgctgggttaatgcctaacaatgaaaatgtaggt
gtcggaagttatatgcaggctcctggacaaggtaggagttctggtccgcctttatacaat
agctctcttggcagtaaagcagaatcaggacaatataatcaaacaacttcaggctttgga
tattcaaacacagagtctgctactggaatttcacgatcacctatgaataatcatgtgcgt
cctattcagccagcatatcctcaggtacctccaatgtatggaaacaggggaccaatcgca
aaaaatggagcacctccaaggattattcctattgcagctcttaatccatatcaaggtagg
tggacaatcaaagccagagtgacagcaaaaggggctctcaaacgctacagtaatcagcgg
ggtgaagggaaggtattttcttttgatcttcttgattctgatggtggagagatacgtgca
acctgctttaatgctgcagctgaccagttctaccaccagattgaggatggcaaagtatat
ttaatttctaaaggcacgctgaaacctgcccaaagaaattttaatcatctccctaatgac
catgaaattatgttggacagctcctccacagtggagccttgttttgaaggtgaacactca
atcccgcaacagagatttcaatttcggtctgtagctgaaattgaaggtattgaaaataat
accgttattgatgtcattggtgttctttgctctattagtccatcaagcccgataatgagg
aaaaatggcactgaaactctgaagagggctctccacatcaaagacatgtctggaagaagt
gttgaagtaactttgtggggagatttttgcaatgcagaaggacaaacactacaaaacatt
tgtgattcaggggtatttcctgttttggctgtgaaatctgctaaagtaagtgactttaat
gggaaggctgtagggacaatacctactagtaaggtgattatagagccagatatccccgag
gctcacaacttaaaagcttggatggagactgatggaaagaatgctcaagtatcttctata
tccagggagacagcaataggaaggcaagatgttaggaagactatatcacaaatcaaagac
gaaaaactagggacttctgagaagccagattggatcacagtagctgctactctatcatat
cttaaaacggacaatttctgctatactgcatgtcccctaaagatcggagaacgacagtgc
aacaaaaaagttataaacaatggagatggaacgtggcgatgtgagaggtgtgatcagtct
gttgaggaatgcgattatagatatatactccagtttcagatacaggaccatactggctta
acatgggtaactggatttcaggaaatcggcgatgaaatttttggtattcctgcaaaagat
ttgtatatgatgaaaaatgaggaccaagatgatgaaaaattttcagaatacgtccgcaag
attctcttcaacaaatatttgttcaagttgaaagtgaaggaggagacatttagtgatgaa
cagcgggtgaagtccactgtggtcaaagtagataaactaaattttgtatccgagactaga
ggtctcttggatttacttaataagcttcagggggttgactcaagttcagtagctttgaag
tctgaaaattctgttctgaacactggaacgaataatgctgcatatggtagttttgggatt
aaggagtctgcacatcctaaagtcaactatacgggaaatgttagttctgctggtcaaggg
attgggttgccagcaagtcaagtaggtcagtttgggaaccaaaatgttggttctaggctt
gcatcaactgggccgactaatgcatatatgatgtgtagtacctgtggtggaatggatcac
agcagtaataattgtccagctgctatggatgttcaagagcattcatatggtggaggtttc
aataatcagacgattcctgctggcagtggcagcactgggggtggtggcagtggtagtgga
cagtgttacaaatgtcatgaacatggtcactgggctaataattgtcccaatgctaggagt
gggcttccaggttatgggagtggcaatgtttctacttctgctggtggtggtggcaatggt
ggtgagtgtttcaaatgtcatcaaaatggtcactgggcaaaagattgtcccagtgcaggg
ggtgtgacttctggttatgggagtggcaatgtttctgcttctgctggtggtggtggcaat
ggtggtgagtgtttcaaatgtcatcaaagtggtcactgggcaaaagattgtcccagtgca
gggggtgcgactgctggttatggaagtggcaatgtttcgtctggaagatacggaagtgct
tcaaagcagtatgtgggtggctactga
DBGET
integrated database retrieval system
