Daucus carota (carrot): 108205527
Help
Entry
108205527 CDS
T05350
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
dcr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108205527
03083 Polycomb repressive complex
108205527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108205527
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
108205527
Histone modification proteins
HAT complexes
HATB complex
108205527
HDAC complexes
Sin3A-HDAC complex
108205527
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
108205527
PRC2.2
108205527
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
108205527
Heterochromatin formation proteins
Other heterochromatin formation proteins
108205527
Chromatin remodeling factors
NuRD complex
108205527
NuRF complex
108205527
NuRF complex (fruit fly)
108205527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_RIG_1st
eIF2A
MIOS_WD40
Beta-prop_HPS5
NBCH_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
108205527
NCBI-ProteinID:
XP_017231009
LinkDB
All DBs
Position
1:complement(21433806..21436334)
Genome browser
AA seq
430 aa
AA seq
DB search
MMGNGRESSESGGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRQEQP
GTDYSVQKMILGTHTSQDEPNYLIVAQLQLPLEDAENDARHYADDDRSNLGGFGAANAKV
QIIQQIHHDGEVNRARYMPQNPFIIATKTVSAEVYLFDYSKHPSKPPADGECNPDLRLRG
HSTEGYGLSWSQFKQGHLLSGSDDSQICLWDVNATPKNKALDAMQIFKIHEGVVEDVAWH
LRHEYLFGSVGDDQYLHIWDLRTPSVTKPIQSVVAHQSEVNCLSFNPFNEWVLATGSTDK
TVKLFDLRKLSNALHTFDSHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDEAQTP
EDAEDGPPELLFIHGGHTSKISDFSWNPCEPWVIASVAEDNILQIWQMAENIYHDEDDLP
GEDLAKASAG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgatggggaatgggagagagtcgtcggagagtgggggagagatcgaagagagattgata
aacgaggagtacaagatatggaaaaagaatactccgtttctctacgatctcgtcattact
catgctctcgaatggccttctctcactgtcgagtggctccccgatcgacaagaacaaccc
ggaacggattactccgttcagaagatgattttgggcactcatacttctcaagacgaaccc
aattatctcattgtggcgcagcttcagctccctcttgaagatgccgagaatgatgcccgg
cattatgctgatgatgaccgctccaatctcggtggtttcggtgccgccaacgccaaggtc
caaatcattcagcaaatacatcacgatggagaggttaacagggcacgctatatgccgcag
aatccctttattattgccaccaagacggtgagtgccgaagtatacctctttgattacagc
aagcatccttccaagcctcctgcggatggtgaatgtaatccagatttgaggttacggggc
cacagcacagaaggatacggcttgtcctggagtcaattcaaacagggccaccttttaagt
ggttccgatgattctcagatatgcctctgggatgtcaatgctacgcctaaaaataaggct
ctggatgccatgcaaatttttaagatccatgaaggagttgtcgaagatgtagcatggcat
ctgcggcatgaatatttattcgggtctgttggggatgatcaatatctgcatatatgggat
ctccgaactccttcagtgacgaagcctattcagtcggtagttgctcatcaaagtgaggtt
aattgtttatcttttaaccctttcaatgaatgggttctggccacgggctctactgataag
acagtgaagctgtttgatcttcgcaagctctccaatgctcttcatacctttgattctcac
aaagaagaggttttccaagttgggtggagtccaaagaatgaaacaatattagcttcttgt
tgtctgggtaggaggctgatggtgtgggatcttagcagaattgatgaagcacaaacacca
gaggatgctgaagatggcccaccagagcttctgtttatacacggtggtcacacaagcaaa
atttcagacttttcatggaacccgtgtgaaccgtgggtgattgctagtgtcgccgaagac
aacatacttcaaatatggcagatggcagagaacatctaccatgatgaagatgatctacct
ggtgaagatttggcaaaagcttctgctggctaa
DBGET
integrated database retrieval system
