Daucus carota (carrot): 108205702
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Entry
108205702 CDS
T05350
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like isoform X2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108205702
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108205702
microRNA pathway
RISC loading complex
108205702
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
Helicase_C
ResIII
DEAD
PAZ
dsrm
DND1_DSRM
SNF2-rel_dom
AAA_22
WipA_N
Motif
Other DBs
NCBI-GeneID:
108205702
NCBI-ProteinID:
XP_017231218
UniProt:
A0AAF0W1E7
LinkDB
All DBs
Position
1:4385376..4399532
Genome browser
AA seq
1660 aa
AA seq
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MQTSEADRVSKKRRFDSLDHNPPPAPVEKMDVDIPSLPGFTPRMYQRKIFKVATKRNTIA
HLDTGAGKTLIAVMLIKEVAKSVKLSGEKRVILFLAPTVALVHQQYKFIKDNTELEVDEY
YGAKGVDFWDAGSWEKEIDQNDVMVMTPQILLDALRKAFLKFGIICLLIFDECHHATRKH
PYAKLMEEFYHNSEDKPKVFGMTASPVIKKGVSSVNDSEHQISELESILDSQIYSVEIKK
EQDLAIPSTKELLRFYDPAVCSSSDLKRKLESTWLKFDGSLLKLQASLSDNFRDTDEKQK
LLRSRMSNIHQKILYCINDLGLMCAFEAVKILTENSPEVNTDCEFYMESSLQYKYYLEEV
LSLVEESLPQGHESLLDEGHDYAKTVSTCFISPKLYELLQIFQSFGEAKEVLCLVFVEQI
ITAKAIERVFKKINYLSHLSASYLTGTNNSVDALTPKLQKEILDSFRSGKVNLLFTTDVV
EEGIDVPNCSTVIRFDLPTTVRSYVQSRGRARQDNSQYLMMLERGNLKQRDQMFDIIQSE
YLMRDTALKRKEDSSSLKPWNTKDISTYVVPATGASVTADSSVGVIYRYCEKLPHDKYYS
SRPSFQILSSENFYQCVMTLPPNAAFKSVIGPFCGSTHLSKQLVCLDACKKLHELGALND
QLLPINEQPEKSDSIVKNKASSAGTTKRKELHGTTCIQALSGTWGEMIDNMEFFAYKIDF
VCDDPDVHYSSFILLVESRLADDVGNFEVDLHLIDRVVKSSVSSCGQVPLDAEQVRKSKC
FQEFLFNGIFGKLIISQISKKGRQILLQNNVSLWKPSYMYLLLPLESAKVPSQETWKIDW
AVIETYGSAIEFFKLNAWLSAEQSGSVTGGLKNNDLIGSDVNCVGNIQFANGILPVTDIK
DMVVLSVHTGKVYSVIEVLLDLSADSTFDGYSDEAPINYASFTDYFQKQYGMSLLRPEQP
LLLLKQSHKAHNLLIDYKEGFLSKKRKETSSKKVDRKPYDLVRMPPELLVFVDVGLSVLK
SVYLLPSLVHRLESLMLASQLREEIKSDVGNVHISSSLILEALTTTKCGESFSMERLELL
GDSVLKYAISCYLFLKYPNKHEGQLSDCRINAIRNSTLHKLGTDKKIQGYIRDNPFDPGR
WTAPGQQSIRLFPCEHGVDTADVPLDSKFVSEDTKVMIGKCCDRGHRWMSSKTISDCVEA
LIGAYYVGGGLVASIQLMKWLGMDVEVQHSLLYDAMTNASLNLYSPKAIEIGIVESKLGY
QFLVKGLLLEAITHASGEQATGRGYCYQRLEFLGDSVLDLLITWYLYQMHKDIDPGELTD
LRAASVNNENFAAATVRKNLHFHLQHSSGLLQNQITEFARLVSGSYSNNKASPPAKCPKA
LGDLLESIAGAILIDSKLNLEEVWRIFKPILSPIVTPDKLELPPLRELNELCDSLGLFVK
DNCLTKGAAVFAELSVQLNDTRLFREGWGQSRKAAKAQAALQLLKDLEDRGISRRKQNVD
SIVASSSPNSAIPICNEACTESLTNLSSPKRHKAYDGRTTTQTPSTNGSKNNMCVLESIR
MTKGGPRNALYDVCKKQQWPLPKFTTTEKKSRYPMEIGEGSEMRQGFSSFVSQITLTIPN
YDVIVVSGHQRADKKSSYDSACLLMLSELEQRGFLSIAKS
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atgcagacttctgaagcagacagggtgtccaagaaaagaaggtttgatagcttggatcac
aaccctcctcctgctccggtggagaaaatggacgtggatatcccttctcttcccggcttt
acgcctcgaatgtatcaaaggaagatttttaaagttgctacaaagagaaatacgattgca
catttagataccggggctggaaagacattaattgctgtaatgctgattaaagaagttgct
aaatctgttaagttgagtggggaaaaaagagtgatccttttcttggcacccactgttgcg
cttgtacaccagcaatacaagtttataaaggataatactgagcttgaagttgatgaatat
tatggtgccaaaggagttgatttttgggatgctggatcatgggaaaaggagattgatcaa
aatgatgttatggttatgacacctcagattctgttagatgcattaaggaaagcatttttg
aaatttggaatcatatgcttattaatatttgatgaatgccaccatgctactaggaagcac
ccttatgcaaaattgatggaggaattttatcacaactctgaagacaagccaaaggttttc
ggtatgactgcttcccctgtaattaaaaaaggtgtgtcttctgtcaatgattctgagcat
caaatttcagaacttgaatctatactagattctcagatttactcagttgagattaagaag
gaacaagacttggccatcccctctacaaaggaactcttaagattctatgatccagctgtg
tgctccagttcagatttaaaaaggaaattggagtccacatggttgaagtttgatggctct
ttgctcaagttgcaagcgtcactttctgataacttcagagatacggatgaaaaacagaag
ttacttagaagcaggatgtccaacattcaccagaagattttatattgtatcaacgatctt
ggtctcatgtgtgctttcgaggctgtaaaaatcttaacagagaactcccctgaggtcaat
accgactgtgaattttatatggaaagctctctccaatataaatattacctagaagaggtg
ttaagtctcgttgaagaatccttgccccaaggccatgaaagtttgttggacgaggggcac
gactatgcgaagactgtatctacatgttttatatctccgaagttatatgaactccttcaa
atttttcagtcatttggggaagctaaagaagtgctttgcctagttttcgttgaacaaatc
attacagcaaaagctattgaaagagtttttaagaaaattaattatttgtctcatttatcg
gcttcatatttaactgggaccaataactccgttgatgccctaacgccgaaactgcagaag
gaaattttggattcattcagatctgggaaggtaaaccttttatttactactgatgttgtt
gaggagggcattgatgtgcctaattgttccactgtgatacgctttgacctgccaacgacg
gttcgtagttatgttcaatcacgtggacgggcacgtcaggataattcccagtatctcatg
atgctagagaggggtaatttaaagcaaagagaccagatgtttgatatcatacaaagcgag
tatcttatgcgagacactgctttaaaaagaaaagaggactcctcaagcttaaaaccttgg
aataccaaagatattagtacatacgtggtgcctgctactggagcatcagtcactgcagat
tctagtgtgggcgtcatttatagatattgtgaaaaacttccccatgacaagtactacagt
tcaaggcccagttttcaaatcttatcgtcggagaacttctatcagtgtgtaatgacgttg
cctccaaatgcagcttttaaatctgtaattggccctttttgtggaagtacccacctatcc
aagcagcttgtctgcctggatgcatgtaaaaagttgcatgagcttggggctctcaatgat
caacttctcccaataaatgaacagccagagaaaagtgattccattgtaaagaacaaagct
tcaagtgctggaacaacaaagaggaaagaactacacggaacaacctgcattcaagcacta
tctgggacatggggcgagatgattgacaacatggaatttttcgcctacaaaatagatttt
gtttgtgacgatcctgatgtacattattcaagtttcatccttttggttgagtcgcgtctt
gcagatgatgtgggaaacttcgaagttgatttgcacttgatcgatagggttgtcaagtct
tcagtttcttcatgtgggcaagtacctctggatgcggaacaggtgagaaaatcaaagtgc
ttccaagaatttttattcaatgggatattcgggaagttgattatcagccagatatcaaaa
aaaggaagacagattttgcttcagaataatgtgtctttatggaagccatcatatatgtac
ttacttttaccactagagtctgcaaaagtacctagtcaagaaacctggaaaattgattgg
gcagttatagagacttatggttctgcaattgagttttttaagttaaatgcctggttaagt
gctgaacaatcaggcagtgtaactgggggtctaaaaaacaatgatctgattggtagcgat
gtcaattgtgtaggtaatatacaatttgcaaacggaatacttcctgtcacagacatcaaa
gatatggttgttttgtcagttcatacaggaaaagtgtattctgttattgaagtccttctg
gacctttctgctgatagtacttttgatggatattctgatgaagcaccaataaattacgcg
tccttcaccgactacttccaaaaacagtatgggatgtctctactacgtccggaacagcct
ctactgctgctgaaacaaagtcataaagcccacaatcttctcattgattacaaagaaggt
tttttaagtaaaaagagaaaagaaaccagcagtaaaaaggttgatagaaagccatatgac
cttgtccgcatgccaccagaacttctggtttttgttgatgtgggattaagtgttctaaag
tcggtgtacttgctaccatccttagttcaccgtctggagtccttaatgttggccagccaa
cttagagaagagattaagagtgacgttggaaacgttcacatatcaagctcactgatcttg
gaagctctaacaactacgaaatgcggtgagagtttctccatggaacgactggagttactt
ggggattcagttttaaagtatgctataagttgctacctgtttcttaaatatccgaacaaa
catgaaggacaattatcggattgccgcataaacgctattcgtaattccactttgcacaag
ttgggaactgataaaaagatacaggggtatatccgagataatccttttgatcctggacgc
tggactgctcctgggcagcagtctatacgtctttttccgtgtgaacatggagtggataca
gctgatgtccctctagatagtaaatttgtaagcgaagacacaaaagttatgattggaaag
tgctgcgataggggtcataggtggatgagctccaagactatatctgattgcgttgaggcc
cttataggagcatactatgtcggaggtggattggtcgcctcaattcaactgatgaaatgg
ctcggtatggatgttgaagttcagcactcactgctttatgatgctatgacaaatgcatct
ttaaacctttacagcccaaaagcaatagagattgggatcgtagagtctaagttgggatat
caattcttggtcaagggtctgttgctggaggccatcacgcatgcttcgggggagcaagcg
accggccgtggctattgttatcagaggcttgaatttctgggcgactctgtgttggaccta
ctcattacatggtacttgtaccaaatgcacaaggatattgatccaggagagttaacagac
ttgagagcagcctccgtcaataatgaaaattttgcagctgcaactgtcagaaaaaatctt
cattttcatctccaacactcatctggacttctccaaaatcaaataactgagtttgctaga
cttgtttcaggttcatatagcaacaacaaggcatcccctcctgcaaaatgtcccaaggca
cttggcgacttattggagagtattgcaggggcaatattaattgatagcaagcttaatctt
gaagaggtgtggagaatcttcaagccgatattatcaccaattgtgacacctgataaactt
gaactccccccgctacgtgaactaaacgaattgtgcgactctcttggattatttgttaaa
gataattgcctaactaaaggagcagcggtgtttgctgagcttagtgtgcagctaaacgat
acacggttgtttagagaggggtgggggcaaagcaggaaagctgcaaaggctcaagcagct
cttcagttactgaaagatctagaagatagagggatttcacggcgaaaacaaaatgtggac
tctattgttgcctcatcttccccaaattcagcaattccgatctgcaacgaagcatgtact
gaatctttgacaaatctttcatcccccaagaggcacaaggcatatgacggacgaaccaca
actcaaactcctagtaccaatgggtctaaaaacaatatgtgcgttctcgaatcaattagg
atgacgaaaggggggccacgaaacgccctctatgatgtatgcaagaaacaacaatggcca
ttgcctaaatttacgacaactgagaaaaagtcaagatatcccatggaaatcggtgaaggc
tctgaaatgaggcaagggttcagtagctttgtgtcgcagatcaccttaaccattccaaat
tacgacgttattgttgtcagtggacatcaacgtgcagacaagaaaagttcatacgactct
gcatgtcttctcatgttgtctgaacttgagcaacgggggtttctaagcattgccaaatca
tga
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