Daucus carota (carrot): 108205952
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Entry
108205952 CDS
T05350
Name
(RefSeq) SWI/SNF complex subunit SWI3A
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108205952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108205952
03036 Chromosome and associated proteins [BR:
dcr03036
]
108205952
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108205952
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108205952
PBAF complex
108205952
GBAF(ncBAF) complex
108205952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
SCIFF
Motif
Other DBs
NCBI-GeneID:
108205952
NCBI-ProteinID:
XP_017231575
UniProt:
A0A166EK56
LinkDB
All DBs
Position
2:complement(50333923..50342293)
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AA seq
544 aa
AA seq
DB search
MENSQDPNFKELYTIPSHSSWFSWDDIHQVEQNSLKEFFDASSITRTPKIYKEYRDFIIC
KYREDPSRRLTFSEVRKSLVGDLSLIHKVFLFLESWNLINFNAPKRDDDDDYVGGEDRWN
VRVEEGAPYGVKVVANPNSLKPVLPPPVAVNGTGNGVLASPLASFKDRYAELAKVKKLVC
GNCKGSCDSGCYEYIKDRSFVICLECFKSENFGENKAAGDFEFNNCSRSNGNMGSAWSEA
ETLLLLESVLKYGDDWEVVAQHVQTKSKLDCISKLIQLPFGELMFGAGNGKPRLWDASDS
ISSIKQVKLDSSEVSDASNDLKNENEQNGNVEDVTPPQKRIRTGRVPDASNSLMKQVSRL
SMMVGPHITSSASEAAVAALCYENLCPREIFEVNDDGSHKLGSSENEIQRASPVKDSDME
ERHATDIPDASSMNIIPAALRMRAATATALGAAAAHAKLLADQEDRVIEYQVAKIIEMQA
KKLQRKMRCIEDLELIMKKEDVQMKELVESLLSKRMNVLKMIFSAGISRWGDRATVTAHA
PSVP
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggagaactcacaggacccgaattttaaagagctctacactatcccaagccactctagt
tggttttcttgggacgatatacaccaggtagagcaaaactcactgaaagaatttttcgat
gcgagttcgattacaagaacccctaaaatttacaaggaatatagggattttattatttgt
aagtatagggaagatcctagtaggcgtctcacgttttccgaggtgaggaagtcgttggta
ggggaccttagtttgattcacaaggttttcttgtttctggagtcgtggaatttgattaat
tttaatgccccgaaacgagatgatgatgatgattatgttggaggagaagataggtggaat
gttagggttgaggaaggggctccttatggtgttaaggttgtggcgaatccgaattcgttg
aagccggttttgccgcctcctgtggcggtgaatgggaccggaaatggagttttggcgtcg
cctttggcgtcgtttaaggataggtatgcggagttggctaaggtgaagaagttggtttgt
gggaattgtaaggggagttgtgattccggatgctatgagtatataaaggataggagcttt
gtaatttgtcttgagtgcttcaaaagcgaaaattttggggagaacaaggctgcgggtgat
tttgaatttaataattgcagtcggagcaatgggaatatggggtctgcttggtctgaagca
gaaactttacttttgttagagtctgtattgaagtatggagatgactgggaggttgttgcg
caacatgtccaaacaaagagtaaactggattgtatttcaaagcttatacagctacctttt
ggggagcttatgtttggagctggcaatggtaaacctaggttgtgggatgcaagtgacagc
ataagcagtatcaagcaagtgaagttagattctagtgaggtttcagatgccagtaatgat
cttaagaatgagaatgagcaaaatgggaatgttgaggatgtaactcctccgcagaagagg
atacgcaccgggcgagttccagatgccagtaattcattgatgaaacaggtttctcgcctt
tccatgatggttggcccacatattacatcttctgcatctgaggctgctgttgcagccctt
tgctatgagaacttgtgcccgagagaaatatttgaggttaatgatgatggcagtcacaag
ttggggtcatcagaaaatgagatacagagagcctctccagtcaaggactcagacatggaa
gaaagacacgctacagatattccagatgcctcttccatgaatattatacctgctgcttta
cgaatgagagctgcaactgcaacagctcttggtgctgctgctgcccatgcaaaattattg
gcagatcaggaagaccgagtaatagaatatcaagttgcgaaaattattgaaatgcaggcg
aagaaacttcaacgtaaaatgaggtgtattgaagatcttgagcttattatgaaaaaggag
gacgtccaaatgaaggagctagtagagtcgctcctatcaaagagaatgaacgtgctaaaa
atgatttttagtgcggggatatccagatggggcgaccgggcaactgtaacagctcatgca
ccatctgtaccttga
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