Daucus carota (carrot): 108207843
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Entry
108207843 CDS
T05350
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108207843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108207843
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
108207843
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
108207843
NCBI-ProteinID:
XP_017233762
UniProt:
A0A166F8N3
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All DBs
Position
2:56456612..56460877
Genome browser
AA seq
1083 aa
AA seq
DB search
MKKTRSLKEILVQLNASKKCVGKRLRADSSSIEKLPIGRRRRLRSGRDQVSEQESSGVSP
VECVDVHDDLDFSGGGGKKCESSCSLKSSKNGKRDDLRMNVRRNCRVSDDEEDLEIICEV
FNSPHAKVVKIEGDDEHEHVLEKGMDVLKFVEEKKHEVSNDSLVCDAPMSNDDNNDDDDK
KKKGGDDDEGNGERKSFSDNESDNRSGNLNKERRIEIMNKSNVKNEVKKSTTDSQGVVNR
LRSSSAKETEMMAINIINPITPEEFDEMSFSSESDNGDNSDDNSRNNSNEHESCEEDVCK
ESGESQIVAKSNEHEIVEVTTTKSTDKVVPLNAKNVSQILANSLLDVGEGQLENFTATHG
IEPVKETSVYKFRFTDEDLEPVEKSEFEKEIEKLFAEMDMHLTSEQIGSAPLEDVDTGAL
ITAQTDCATLCSRGIHHLVFKEEVGTVCKYCSHVEREIRYILPSLSKPSSRRREKNSFAE
AECPFLPDHFQITGAENHVSKNYKTTGTVWDLIPGTKSTMYEHQREGFEFIWKNIAGGIM
IEDLEKPLSSSGSGCIISHAPGTGKTRLTLVFLQSFMRMYPESKPVIIAPKSLLLTWEEE
FKKWNVDIPFHNLNNLELSGQENAAAVGLSKKGRSSKNNETVTRLVKLFSWKLDKSILGI
TYGLFEKLVGSETRKVGDCSNPVVQQMGKSLLKLPSLLVLDEGHTPRNNGSYIYRSLFEV
ETERRIILSGTPFQNNFKELHNTLRLVNPKFSKTSKTEWASLTKKLKKLKEIISPFVHIH
KGRILQENCPGLNDAMILLRPTNLQQTLLDLLIDLVKPREQEQRTNYLQFSHVLSIVSVH
PSLLPDSWFQEDQFSAYRDRLERLKNDPYSGAKTKFVIELCRLSEALDEKVLIFSQFIDP
LVFIREQLQTQFKWLEGREVLYMHGSLEPKQRQSLITALNDPKSKVRVLLASIKACSEGI
HLVGASRVVFLDVVWNPSVERQAISRAYRIGQKKIVYTYHLIAGKMEVDKYKRQIQKDRF
SDMVFSCKDGVGSCKENIPSKVFEDKILEEMFQRNDKLGGMFEKILYQPRESDLVDSFDL
VEK
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaacacgcagccttaaggaaattctggtgcagttgaatgctagtaagaagtgt
gtaggtaagcgattgagggccgatagctcttcgattgaaaagcttccgattggtagaagg
aggagacttagaagcggtagagaccaagtttctgagcaggagtctagtggggtgtctcca
gttgaatgtgtggatgtgcatgatgatctcgatttcagtggagggggtggcaagaaatgt
gagagttcgtgttctttaaaatcgagtaaaaatgggaaaagggatgatttgaggatgaat
gtgagaagaaattgtagagtgagtgatgatgaagaggatttggaaattatatgtgaggtg
tttaattctcctcatgcgaaagtggtgaaaattgagggagatgatgagcatgagcatgtt
ttggaaaaaggtatggatgttcttaagtttgttgaggagaaaaagcatgaggttagtaat
gattcgcttgtttgcgatgctcctatgagcaatgatgataataatgatgacgatgataag
aagaagaaaggaggagatgatgatgagggaaatggggagagaaagtctttctcagataat
gaaagtgataacaggtctggtaatttaaacaaggaaaggaggattgaaattatgaataag
agcaatgtcaagaatgaagtcaagaagagtactacagattcccaaggtgtggtgaatcgt
cttcgatcaagttcagctaaggagactgaaatgatggcaatcaacattatcaaccctatt
acgcctgaggagtttgatgagatgagtttttcttcggagagtgataatggtgacaacagt
gatgacaacagtagaaacaacagcaatgaacatgaaagttgtgaggaagatgtctgtaaa
gaaagtggagagagtcaaattgtcgcaaaaagcaatgaacatgaaattgttgaggtgaca
accacaaaaagcacagataaggttgtgccattgaatgcaaaaaatgttagccagattctg
gccaattctttattagatgtgggagaaggtcagctggaaaattttactgcaacccatggg
atagaaccggtgaaagaaacttctgtgtacaagtttaggtttacagacgaagatttagag
ccagtggagaaatctgagtttgagaaagaaattgagaagttgtttgcagaaatggacatg
caccttacttctgaacagattggttccgctcccttggaggatgttgatactggtgctctc
atcacggcacaaactgattgtgccactctttgtagtcgaggcattcatcatcttgttttt
aaagaagaagttggaactgtgtgcaaatattgttcacacgtggagcgcgagatcagatac
attctcccctctcttagcaagccttcttcacgaaggcgtgagaagaattcttttgctgaa
gcagaatgcccttttctcccggatcactttcaaatcactggtgctgaaaatcatgtttct
aaaaattacaaaactacgggaactgtttgggatttgataccagggactaagagcaccatg
tatgagcaccagcgtgaaggttttgaatttatctggaagaacatagctggtggaatcatg
atcgaggacttagagaagccgctctctagttctggatcaggatgcataatatcacatgcc
cctggtacaggaaaaacacgccttactcttgtatttcttcaatcattcatgaggatgtac
ccagaatctaagcccgtaattatagctcccaagagcctgcttcttacttgggaagaggag
ttcaagaagtggaatgtggacataccatttcacaacctgaacaacctggagctctcgggc
caggaaaatgcagcagctgtaggcttgtcgaagaaaggaaggagcagcaagaacaatgaa
accgttactcgcttagtgaagctgttttcttggaaattggacaaaagcattttaggaata
acctatggcttgttcgaaaaacttgtaggatcagagacaagaaaagttggagactgcagc
aatccagtagtacagcagatggggaaatctcttctcaagcttcctagtcttttagtcctc
gatgaaggacacacacctcgcaataatggaagctatatttatcgttctttgtttgaggtt
gagacagagaggcgcatcattctgtcaggaactccctttcagaataactttaaggagctt
cataataccttgcgcctggtgaatcccaaattttccaagacctcaaaaactgaatgggct
tctttgacaaaaaaactcaagaagctgaaagaaatcatcagtccttttgtgcatatacat
aaaggaagaatacttcaagaaaactgtcctggtttaaatgatgccatgattcttcttcgc
cccacgaatttgcagcaaacactactagacttgttaattgatttggtgaagcccagggaa
caggaacagagaactaactacctccagttttcacatgtactgtccatagtatccgtccac
ccctcgctcttacctgacagttggtttcaggaagatcaattttccgcttatagagatagg
cttgaaaggctaaaaaatgatccttattctggtgcaaagacgaaatttgtgatagaacta
tgtaggctgagtgaggcattagatgaaaaggtactgatttttagtcaatttatcgaccca
ttagtcttcataagagaacagctccagactcaattcaagtggcttgaaggaagagaggtg
ttatatatgcatggaagtctcgaaccaaagcagcgccaatccttaatcactgctctgaat
gatcccaaaagcaaagtgagggtacttttggcatcaataaaggcttgctctgaaggcatt
catcttgtgggggcttcaagagttgttttcttggatgtggtctggaatccctctgtcgaa
aggcaagcaataagtcgagcataccgaataggccagaagaagattgtttacacttatcat
cttattgcagggaagatggaggttgacaaatacaaacgtcaaattcagaaggaccggttc
tcagacatggttttctcttgcaaagacggcgttggcagctgcaaggaaaatataccgagt
aaggtctttgaagacaagattctggaagagatgtttcagcgcaatgacaagctcggtggc
atgtttgaaaaaattctgtaccaaccaagagaatcggacttggtagattcttttgatttg
gtagaaaaataa
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