Daucus carota (carrot): 108208160
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Entry
108208160 CDS
T05350
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108208160
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108208160
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Mt_ATP-synt_B
NosD
Motif
Other DBs
NCBI-GeneID:
108208160
NCBI-ProteinID:
XP_017234146
UniProt:
A0A166EAB1
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All DBs
Position
2
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AA seq
433 aa
AA seq
DB search
MGRGRKVVFFLIFLSFASGIYANIGEFDDFLKQQAEEAKQIAEQSYNPHPEEVANSLNKQ
VGDLLHSNRTRRHLAGAECMATNPIDRCWRCHGDWHENRKRLADCGKGFGRNTIGGRDGE
IYVVTDPSDNNVEEPTPGTLRHAVIQMRPLWIIFSKSMVIRLEEELIMRKDKTIDGRGVN
VHIAYGAGITIQYISNVIIHGIRIHHIIPRPGGMVRDAVNHIGLRTISDGDGISIYGSSN
VWIDHVSLEKCSDGLIDAIEGSTAITISNCKFNNHDHVMLFGGSDKSVQDRIMQVTVAFN
RFGKGLIQRMPRARHGFFHVVNNDYNRWQMYAIGGSANPTIISQGNRFKAPENPFAKGVT
KRDYATEEEWKNWQWRSEGDLFKNGAYFNESGPPFIQENPAIRRRLIKAKPGSFAGRLTR
YAGALKCKLGHPC
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggggcagaaaggttgttttcttcttgattttcttgtcatttgcttctggaatc
tatgcaaatataggagagtttgatgattttcttaagcaacaagctgaggaggccaagcaa
atagcagaacaatcgtataatcctcatcctgaagaagttgctaatagtttgaacaagcaa
gttggcgatttgctgcattccaatcgcacgaggagacatcttgcaggagcagaatgcatg
gcaacaaaccctatagacagatgctggaggtgtcacggggattggcatgaaaatcgaaag
aggcttgcggactgtgggaagggctttggtcgtaacaccattggtggaagagacggcgaa
atctatgttgtaactgatccatctgacaataatgttgaggaaccaacaccaggaactctt
cgacatgctgttattcagatgcgtccgttatggatcattttttcgaaatcaatggtgatt
aggctcgaagaagagctcattatgagaaaagacaagacaattgatgggagaggtgtgaat
gttcacattgcttatggtgccggaattactattcagtatattagcaacgtgataattcat
ggcattcggattcatcacattattccaagacctggtggaatggttagagatgctgtaaat
cacattggacttcgaacaatcagtgatggtgatggaatcagcatttacggttcaagtaac
gtctggatcgatcatgtttcactagaaaaatgttcagatggcctcattgatgctattgag
ggatcaacagctattacaatctctaactgcaaattcaacaaccatgatcatgtgatgttg
tttggaggaagtgataaatctgtgcaagatagaattatgcaagtaaccgttgcatttaac
cgatttggaaagggcttaattcagcggatgcctagggctcgacatgggtttttccatgtg
gttaacaatgattacaatcgatggcaaatgtacgctattggtggcagtgctaatcctacc
atcattagtcaaggcaaccgtttcaaagcccctgaaaatcctttcgctaaaggggtgaca
aagagggattatgcgacagaggaggaatggaaaaactggcagtggagatccgaaggcgac
ttgtttaaaaatggagcctacttcaatgagtctggaccgccttttatccaagaaaatcca
gcgattaggaggcgtctgatcaaagcaaagcctggaagttttgccgggagacttacacgc
tacgcaggtgctctcaaatgcaagcttggccatccttgttaa
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