Daucus carota (carrot): 108208574
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Entry
108208574 CDS
T05350
Name
(RefSeq) polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM isoform X1
KO
K11462
polycomb protein EED
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108208574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108208574
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
108208574
PRC2.2
108208574
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_EML_2
EIF3I
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
108208574
NCBI-ProteinID:
XP_017234593
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Position
2:42549845..42559203
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AA seq
382 aa
AA seq
DB search
MKGKKGAAIPPETVKMKTLECEVLRGSLSPSNTRKFKLSTRHREGNQPLYGISYNFLDSH
LFDLFATVGGNRVNVYQCLEEGRIALLQSYVDDDVNESFYTVTWSCNLQGKPLLVAGGVN
GVIRVIDVGNEKIHKSIVGHGYSINEIRTQMLEPSLVLSASKDESVRLWNVQTGVCILIF
AGAGGHRNEVLSADFHPSDKYRISSCGMDNTVKIWSMEDYWTNVEKSFAWTDLPSKFPTK
FVQYPLFMAKVHTNYVDCNRWLGDFILSKSVQNEMVLWEPIIKDQPPGEGSADVLQKYPV
PECDMWFIKFSCDFHYKAAAIGNKEGKIFVWDLQSSPPVLITRLCHGTKSTIRQTAMSYD
GKTILSCSDDGYICRWDEDTTS
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtaaaaagggggcagctatcccgccggaaacggtgaagatgaaaaccctagag
tgtgaggtgttgagaggaagcttgtcgccgtcgaatacaagaaagtttaaattgagcacc
aggcatcgggagggtaaccaacctctctacggcatttcttacaacttccttgactctcat
ctcttcgatctctttgctactgtcggcggcaatcgggtgaatgtttaccaatgccttgaa
gaaggtcgtatcgctcttctccagtcttatgtcgatgatgatgtgaacgagtccttttac
acagtaacctggtcatgtaaccttcaagggaaaccattattggtggctggaggagtcaat
ggtgtaattcgagtcattgatgttggaaatgagaagatacacaagtccatcgtcggtcat
ggttactcaataaatgaaatcaggacccagatgttagaaccatcgcttgtactttctgcc
agcaaagatgaatctgttcgtctatggaatgtccagactggagtatgcattttaatattt
gctggagctggagggcatcgaaatgaagtcttgagtgcggactttcacccttcagataaa
tatcgcatatcaagctgtggtatggacaatactgtcaaaatctggtcaatggaagattat
tggactaatgtcgaaaaatctttcgcatggactgacctaccatcaaagttccctacaaaa
tttgtgcagtatccgctgtttatggctaaagtccatacaaactatgttgactgcaatagg
tggcttggcgattttatcctgtccaagagtgttcagaatgaaatggtgttatgggagcca
ataatcaaagatcagccaccaggggagggttctgctgatgtgctccaaaagtaccctgtt
ccagaatgtgacatgtggtttatcaagttctcttgtgatttccattacaaagctgctgct
ataggaaataaagaaggaaagatttttgtttgggatttgcagtctagccctcctgttctc
atcacaaggttgtgtcatggaacaaaatcaactattaggcagactgcaatgtcctacgat
ggaaaaactatccttagctgctctgatgatggatatatttgtcgttgggatgaggataca
acttcctag
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