Daucus carota (carrot): 108208743
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Entry
108208743 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108208743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108208743
03012 Translation factors [BR:
dcr03012
]
108208743
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108208743
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108208743
Translation factors [BR:
dcr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108208743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
ABC_tran
AAA_23
Myosin_head
PhoH
ATPase_2
Motif
Other DBs
NCBI-GeneID:
108208743
NCBI-ProteinID:
XP_017234757
UniProt:
A0AAF0WF54
LinkDB
All DBs
Position
2:complement(43076206..43089928)
Genome browser
AA seq
1156 aa
AA seq
DB search
MHYRLAFFLLSRTTRTSLIHTLSSSSIYNLTPVCPPLFKLPTSPLYSPSCLFAGIALLGR
RNFSGYAVEQFSDDEYECDHENHPASSSVANIDEWKWKLSLLLRNEKDIEIISRDKRDRR
DYEQICNLAKRMGLYCELYGKVVVASKVPLPNYRPDLDDKRPQREVVVPLSLQRKIEGLL
QEHLDRMHLISGEINSSASNIGASELDDYVNTGKNDDSFLDRSVMEKILIRQSLRMQNMQ
RAWQESPEGKQMLNLRRSLPAYREKDRLLQAIAQNQVIVISGETGCGKTTQLPQYILESE
TESGRGAFCNIICTQPRRISAMAVAERVSTERGEPLGNTIGYKVRLEGMKGKNTHLLFCT
SGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLLIVLKELLPRRRDLRLILMSATLNA
ELFSNFFGRAPVIHIPGFTHPVRAHFLEDVLEITGYKLTSFNQIDDYGQEKVWKTQKQLV
PRKKKNQISALVEESLNKSSFEKYSSRARDSLSCWSPDCIGFNLIEAVLCHICRKERPGA
VLVFMTGWEDISCLRDQVKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPLNVRKIVL
ATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPG
ECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGDFLSAALQPPAPLAVQN
AIDFLKMIGALDEGENLTHLGEFLAMLPLDPKLGKMLIMGAIFRCFDPILTIVAGLSVRD
PFLLPQDKKDLAGTAKARYSAKDYSDHMALVRAFEGWKDAEREGSAYEYCWRNFLSAQTL
QAIHSLRKQFNFILRDAGLLDADAGTNNRLSHNQSLVRAVICSGLFPGIASVVHRETSMS
FKTMDDGQVLLYANSVNARYQTIPYPWLVFAEKVKVNTVLLRDSTGVSDSILILFGGNLH
HGVQAGHLKMLEGYIDFFMDPSMAECYVKLKQELDNLLQKKLKDPGLDIHKEGKYLMLAV
QELVSGDQCEGRFVFGRDCKKPKECSDSDRFTRDGANPKSLLQTLLMRAGHSPPKYKTKH
LKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDKPDEEDNSPLDVTDN
MLKLLGKRRRSKGRPG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcattacaggctagctttcttcttgttatctcgcaccacccgaacctcacttatacac
acactctcttcttcatctatttacaatctcacccctgtttgtccacctcttttcaaacta
ccaacttcaccactttacagtccctcctgtcttttcgccggaattgcacttctgggtcgc
cggaatttttctgggtatgctgttgaacagttctccgatgacgagtacgagtgcgatcac
gagaaccatccggcatcatcctcagtggccaacattgacgagtggaaatggaaacttagt
ttgctattgcgaaatgaaaaggatattgaaattatttccagagacaagcgggatcgaaga
gactacgagcaaatatgcaaccttgctaaaagaatggggctttactgtgaattgtatgga
aaagtggttgttgcaagcaaagtgcctcttcccaactataggccagatcttgatgataaa
cggcctcaaagggaggttgttgtcccattaagcttgcaaagaaaaatcgaaggtctcctt
caagaacacttggaccgaatgcatttaatttctggagagatcaacagctcggcatccaac
attggagccagtgaactggatgattatgtaaatacaggtaaaaatgatgattcattttta
gacaggtccgtaatggaaaagattcttatacgacagagcttgaggatgcagaatatgcag
agagcttggcaggagtcacctgaaggtaaacagatgcttaatttgcgtagatcattgcct
gcttacagggaaaaggataggctgcttcaagcaattgcgcaaaatcaggtcatagtgata
tctggtgagactggttgtggcaagaccactcaacttcctcagtatatactagagtctgaa
acagaatctggccgtggggcattttgtaacataatttgtacacaacctcgaagaatatct
gcaatggctgtagcagagcgagtgtctacggaaagaggagagccacttggcaacactatc
ggttacaaagtccggttggaaggaatgaaaggtaaaaatacccacctgcttttttgcaca
agcggaatcttgctaagaaggctcttgagtgatcgcaatcttaacggtgttacccatgtt
tttgttgatgagattcatgagcggggcatgaatgaagacttcctattgattgtgttgaag
gaacttcttccacgtcgtcgagatttgaggttgattttgatgagtgctactctaaatgct
gagctattttccaatttttttggaagagcaccggtgattcacattcctgggttcacacac
ccagttagagcacattttttggaagatgtgctagaaataacaggatataagctgacttca
tttaatcaaattgatgactacggccaagagaaggtgtggaaaactcaaaaacagcttgtg
ccaaggaaaaagaaaaaccagatcagtgctcttgttgaggagtctctgaacaaatcaagc
tttgagaaatatagctcaagggcacgtgattcactatcttgttggtcacctgattgtatt
ggatttaatcttattgaggctgttttgtgccatatatgtcgaaaggagcgtccaggtgct
gtattagtatttatgactggctgggaggatattagttgtttaagggatcaagttaaagcc
catcctcttttgggagaccctaatagagtattgttgcttacatgtcatggttccatggca
acctctgaacagaaacttatatttgagaagccacctctaaatgtacgcaaaattgtactg
gctacaaatatggcagaggcaagtattacgattaatgatgttgtttttgtggttgattgt
ggaaaagccaaggagactacttatgatgccctaaataataccccttgtttgttgccttct
tggatatcacaagcttctgctcggcaaaggagaggtagggctggtcgtgtgcagccaggc
gaatgttaccatctatatcctcgatgtgtttatgaagcatttgctgagtatcaactcccc
gagcttctgagaaccccactaaattctctttgcttgcaaattaaaagtttgcaggttggc
agtattggagattttttgtcagctgctctgcagccgccagcaccattagctgtacaaaac
gctattgattttttgaagatgattggagcattagatgagggagaaaatcttacccatctt
ggtgagtttttggcaatgcttcccttggatcctaagcttgggaaaatgttgataatgggg
gctatcttccgctgctttgatcctattctgacaattgtggctggacttagcgttagggac
ccttttcttttgccacaagataaaaaggacttagcaggaactgcaaaagccagatactct
gcaaaggactacagtgatcacatggctcttgtgcgtgcatttgaaggatggaaggatgct
gaaagagaaggatcagcgtacgagtattgctggaggaattttctttctgctcagacactt
caagctatccattctcttaggaagcaattcaacttcatcttaagagatgctggactgcta
gacgctgatgcaggtactaacaaccgattaagtcacaaccagtcacttgttcgtgcagtt
atatgttctggcctttttcctggaatagcatcggtggtgcacagagagacatcaatgtcc
ttcaaaacaatggatgatggtcaggtgttactttatgcgaattctgtgaatgcacgctac
cagacaattccatatccgtggttggtctttgcagagaaggtgaaggttaatactgtactg
ttacgtgattcaactggtgtttctgattctattctgatcctttttggtggtaatctacac
catggagtccaggccggacatctgaaaatgttggaaggatatattgatttctttatggat
cccagtatggcagagtgctacgtgaagctgaagcaggaacttgataatctacttcaaaag
aagctaaaagatcctggtcttgatatccataaagaaggcaagtacctgatgcttgctgtt
caggagctggtgtctggagatcaatgtgaagggagatttgtatttggccgtgattgcaag
aagcctaaggagtgtagcgacagtgataggtttacaagagatggggcaaatccaaagagc
ctgcttcagactcttctgatgagggctgggcactctcctccgaagtacaaaacaaaacat
ctaaaaactaatgaatttagggctctggtagagtttaagggtatgcagtttgttggcaag
cccaagaaaaacaaacaacttgcagagagagatgcggctatagaagcactagcctggttg
acgcacacttctgacaaacccgatgaagaagataattctccgcttgatgtcactgacaac
atgctgaagcttcttggtaagcgtagaagatcaaagggacggcctggttga
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