Daucus carota (carrot): 108208824
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Entry
108208824 CDS
T05350
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108208824
Membrane trafficking [BR:
dcr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
108208824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
FimL_2nd
Motif
Other DBs
NCBI-GeneID:
108208824
NCBI-ProteinID:
XP_017234870
UniProt:
A0AAF0WCH1
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All DBs
Position
2:complement(12656452..12666688)
Genome browser
AA seq
1421 aa
AA seq
DB search
MAASPPFGMEDQTDEDFFNKLVDDDDDFNAVSLKKSGLGLGAKVGGGNEVDEVNVFRNLS
KGVEESSAHKGLTAMEFVELTGKFSDDLIKLDNDEKGSVVEANLAGEISEDVGILDKGDK
RTVVGVDLAASEGDKLGNSGIKEVQWSAFNAVVVQNGVNDLDIFGEFGEREKMEESLACE
SKVVYGSDEHCSAYMDGSQSCSQYQDGQVNAAEAVYSADGQDVNSTEYWEKLYPGWKYDH
ITGQWYQVNGYDATSSAEGRFDTAVSNETTDVSYLQQTSQSGVGTVAQSGTTESVTSWNQ
TSRMGEATEMASKWNQISQTIDSTESVSNWNQVPTSNNGYPSHMYFDPQYPGWYYDTIAQ
EWRSLHTYVPSTQSAVQSANHLNQNGFSSNCTSQIDDQKTPGLYGQVGNHVAGGFSHQSQ
DYNWSGSFTNYNQQDSNTWQPSSANSGFQGNQKSANQYDHKHSLTNQVSQQNSYDYEGSV
PYNEKASQGLNDFSTISEHQSFISGGNFTPHYNQPQIKENEHMHTSSNYYDNQTASNYFQ
QQYQSGNQFSNASTAVRSSDGRPPHALVSFGFGGKIIVMKDGNSPPGNLSSAGQVTVGGS
ISVLNLMEVVSGRPDAINSRSGVFDYFNNLCRQSIPGPLTGGNVSAKELYRWTDERIANC
ESPDIDYRKAEVLRLLLSLLKISLQHYGKLRSPFGTDKALKETDTPESAVARLFASAKGH
GSDSSKYGALAHCLQKLPSEAKMQATASEVQTLLVSGRKKEALISAQEGHMWGPALVLAA
QLGDQFYVDTVKQMALHQLVPGSPLRTLCLLIAGQPAEVFSADSSANGNISNTKLGANGM
LDDWEENLAVITANRTKDDELVLIHLGDCLWKERSEIVAAHICYLVAEANFEPYSDSARL
CLVGADHFKFPRTYASPEAIQRTEIYEYSRLLGNSQFTLLPFQPYKLVYAHMMAEVGRVS
ESMKYCQAVLKSLKTGRAPEVETWRQLASSLEERIKTHQQGGFSTNLAPAKLVGKLLNLF
DSTASRVVGTLPPPASSTSGSNYGNGHYNQSSGPRVLTSQSTMAMSSLIPSDSMEHINEL
TADGNRRTIHSRSASEPDFSRTPRQDQTDSSKEESSTNTQGKASVSGETSRFGRFGFGSQ
FIQKILKPRQEKQAKLGETNKFYYDEKLKRWVEEGVDPPAEEAALPPPPTTAAFPNGTSD
YNLNSALKNEGPRSNGSPDQGGPTSLVHSSGIPPIPPTSNQFSARGRMGVRSRYVDTFNK
GGVNQTNMFQSPSVPSVKAKSNASPKFFVPAQVSGQTLDSAVDGSEQTTSGNLASFSDPV
QSFAPSSSMNMQKNASMDDLSKRRTTTPGIDNEFLPAYSRRTASWSGSIADSYSPPSATE
IKPLGEVLGVPPSLYMPPSPALVHSSANGGSYGDDLHEVEL
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgagtcctccatttggaatggaggatcagactgatgaggattttttcaataag
ttggttgatgatgatgatgattttaatgccgtatcgttgaagaaatcaggtttggggtta
ggtgcgaaagtagggggtgggaatgaggtagatgaggtgaatgtgtttcgtaacttaagt
aaaggagtagaggagagtagtgcacataaaggtttgacagcaatggagtttgtagaattg
acgggaaaatttagtgatgatcttattaagttggataatgacgaaaaagggagtgtggta
gaggcgaatttggcaggggaaattagtgaggatgtcggtatattggataagggtgataaa
cggacagtggtgggggtggatttggcagcaagtgagggtgataaattggggaattcgggt
atcaaggaggtgcagtggagtgcgtttaatgctgttgtggtgcagaatggtgttaatgat
ttagatatttttggtgaatttggagaacgggagaaaatggaagagagtttggcatgtgag
tcgaaagttgtatatggtagcgatgaacattgttctgcatatatggatggtagtcagagt
tgcagtcagtatcaagacggtcaggttaatgctgctgaagctgtatatagtgcggatggg
caggatgtgaatagtaccgagtactgggaaaagttgtatcctgggtggaagtatgaccat
attacagggcaatggtatcaagttaatggttatgatgcaacctcaagtgcagaagggaga
tttgacactgctgtttctaatgaaacaacagatgtttcttacttgcaacaaacttctcag
tctggcgtggggacagtagcgcaaagcggtacaactgagagtgttactagttggaatcaa
acttctcgtatgggagaggctactgaaatggcatctaagtggaatcagatatctcaaaca
attgacagcactgagagtgtgtcaaattggaatcaggttccgacaagtaataatgggtat
ccttcccatatgtattttgatcctcaatatcctggttggtattatgacactattgctcaa
gaatggcgttctttgcacacatacgtaccatccactcagtcagctgttcagtctgcaaat
catctgaatcaaaatggcttttcttctaactgtacatcccagatagatgatcagaaaaca
ccgggcttatatgggcaagttggtaatcatgtggctggaggatttagtcatcaaagtcaa
gattataactggtctgggtctttcactaattacaaccagcaggattcaaacacgtggcaa
cctagttctgcaaattcaggtttccaagggaaccaaaaatcagcaaatcagtatgaccac
aagcattcattaaccaaccaggttagtcagcaaaattcttatgattatgaaggatcagtt
ccgtacaatgagaaagcaagtcagggtcttaatgacttttcaactatttctgagcaccaa
agcttcatttctgggggaaacttcactccgcattacaatcagccacaaatcaaggaaaat
gaacatatgcatacctcaagtaactactacgacaatcagactgcatcaaattattttcag
caacagtatcagagtggaaaccagttttctaatgcttcaactgcagtgagatcatcagat
ggacgtcccccgcatgctttagtttcttttggctttggaggaaaaattattgttatgaaa
gatggcaacagtccacctggaaatttatcctccgcaggacaggtcactgtaggaggatca
atatctgttctcaacttgatggaagttgtaagtggaaggcctgatgctataaactccaga
tcaggcgtctttgattactttaataacctttgcagacaatcaattcccggtccgctcact
ggtgggaatgttagtgctaaagagttgtatagatggactgatgaaagaattgcaaattgt
gaatctcctgatattgattataggaaagcagaagttttgaggctgcttctctcattgctc
aaaatatctcttcagcactacggaaagctccgttctccttttggcaccgataaggcgtta
aaggaaaccgatactccagaatcagcagttgccagactttttgcatcggccaaggggcat
ggttcagacagcagtaagtatggtgctcttgcccactgcttgcagaagttgccttctgaa
gcaaagatgcaggcaacagcctcagaggttcaaactcttcttgtttctggaagaaaaaaa
gaggctttgatttctgcccaagaaggtcatatgtggggacctgcactcgtacttgctgca
caacttggcgatcagttctatgttgatacagtgaagcaaatggctctccaccagctagta
ccaggatcacctttacgaacattgtgcctgctcattgctggtcaaccagcagaggtattt
tctgcagacagtagcgccaatggtaatatttccaatactaagcttggtgctaatggaatg
cttgatgactgggaagagaatttggcagtgataactgcaaatagaacaaaagacgacgaa
ctcgtccttattcatcttggagattgcttgtggaaagaaagaagcgaaatagtcgctgcc
catatatgttacttagttgcagaagcaaactttgagccatattcagacagtgcacgactt
tgtcttgttggtgcagaccatttcaaattcccacgaacatatgctagtccagaagctatt
cagaggacagagatatatgaatactcaaggttgcttgggaactcccaattcacactgctc
ccatttcaaccatataagcttgtatatgcacacatgatggccgaagtgggaagagtatca
gaatcaatgaagtactgtcaagcagtactgaaatctctgaaaactggtcgagcacctgaa
gtggaaacgtggagacagttggcatcatctcttgaggagaggataaagactcaccaacag
ggtggtttctcgacaaacttggctcctgcaaagttagtaggtaaattgcttaatttattt
gatagcacggcttctcgtgttgttggaaccctaccacctcctgcatcatcgacatctggt
agcaattacggaaacggacattataatcaatcatcgggtcctagggtgttgacaagtcaa
tcaacaatggcaatgtcatctttaattccttcagattcaatggagcatattaatgaattg
actgccgatgggaatagaaggacaattcacagcagaagcgcttcagaaccagacttcagt
aggactcctagacaggaccagactgattcatcaaaagaagaatcttctaccaatacacaa
ggcaaagcatcagtttctggggaaacatctcgatttgggcgctttggatttggctcccag
tttatacaaaaaatactgaaaccccggcaagaaaaacaggctaaactgggcgaaacaaat
aagttctattatgatgagaaacttaagcgatgggtagaggaaggcgttgaccctccagca
gaggaagctgcactaccacctccacctaccactgcagccttcccaaatggaacatcagat
tacaacctgaatagtgccttgaaaaatgaaggaccccgcagtaatggaagcccagaccaa
gggggccctacttctttggtacatagttctggaattccaccaattccacccacctcaaac
cagttctcagctcgcggacggatgggagttagatcaaggtatgttgacacatttaacaaa
ggcggtgtaaatcaaacaaacatgttccagtcaccatctgtgccttcagttaaggccaaa
agcaatgctagcccaaaattttttgttcccgcacaagtatccggacagacactggattct
gctgtggatggaagtgaacaaaccacttctggtaatttagcatccttcagcgacccagtt
cagtcctttgccccgtcatcatctatgaacatgcaaaagaatgcaagtatggatgacctc
tcaaagagaaggacaacaactcctggcattgacaatgaattccttcctgcttattcccga
cgaacagcatcatggagtggcagcattgccgattcttatagtcctcccagtgccactgaa
ataaaacctctaggagaggtgttaggagtgcctccctcactgtacatgcctcctagtcct
gccttagtacactcgtcagcaaatggtggcagctatggggatgatcttcatgaagttgaa
ctataa
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