Daucus carota (carrot): 108208829
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Entry
108208829 CDS
T05350
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X2
KO
K14328
regulator of nonsense transcripts 3
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108208829
03015 mRNA surveillance pathway
108208829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108208829
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108208829
mRNA cycle factors
P-body specific factors
108208829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
DUF4771
Motif
Other DBs
NCBI-GeneID:
108208829
NCBI-ProteinID:
XP_017234881
UniProt:
A0A166DY87
LinkDB
All DBs
Position
2:43346019..43357054
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AA seq
503 aa
AA seq
DB search
MKGVADRTKVVLRHLPPTITQPVLMDQIDDRFGKRYKLISFRPGNNSAKHQICARAYLDF
QKPEDVIEFADLFGGHVFVNEKGTRFKTVVEYAPSQRVAKHLSKKDGREGTIYKDPVYME
FLESIAKPIENLPSAEIQLERREAERVGAVKDAPIVTPLMQFVRQKRAAKGGSRRFLANG
KPARTGGISSGTSVSVAVRRGSEKNKYITRDTAKRTGSKEKSAYIIVPKRNDQQIMEKAI
SDAASGTKIVGEERGLPGTTEMGKKKILLLKGREKEISHASVDLSLKQTTSSPVKNSIGV
TAPRQNNQQEASGKIIKGILLNKDLRKNTSMVQFNTRNQVLYQEKDKKVPHSPKEKTFLD
ANGNNSVKTEKQEKRARNKGRPERGVWTALSRSEGSNASNESLPSANSVHSQSLDPREGG
QGDSKKNMLASKREELKHVGRGHHISVDNSSYKHSGRHGLQHNGKDTDGPMIIGEGKPFK
KGLSSGYSSHEKQVWVQKSSSGS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcgtcgccgatcgcaccaaagtggtgctaaggcacttgccgccgacgattact
cagcctgtgcttatggaccaaatcgatgatagattcggcaagcgctacaaattgatttcg
tttcgccctggcaacaacagtgcaaagcatcagatctgtgctagagcctatttagacttc
cagaagccagaggatgttatagaatttgctgacctcttcggtggacatgtttttgtcaat
gaaaaaggaacccggtttaaaacagtggttgagtacgctccttcacaacgtgtagctaag
catttgtctaaaaaggatggccgtgaaggaactatatacaaagatccagtatatatggag
ttcttggaatctatagcaaagcctattgaaaatcttcccagtgctgaaattcaattagag
aggagagaggctgaacgagttggtgctgtaaaggatgctccaatagtcacacctctaatg
caatttgttcgtcagaaaagagctgccaagggtggatctcggagatttttggctaatggg
aagcctgccaggactggtggaatatcatccggaacttctgtttcagttgctgttagacgg
ggttctgagaaaaacaagtatattacaagagatactgcaaaaagaactggcagcaaagag
aaatcagcatatatcattgtccccaaacgaaatgaccaacaaattatggaaaaagctatt
tcagatgcagcatcaggaactaaaattgtaggagaggaaagagggctccctggaacaact
gaaatgggaaagaagaaaatattactactgaagggccgagaaaaagaaatctctcatgcg
tctgtggacttgtctctaaagcaaactacatcgtcacctgttaaaaattctattggggta
actgctcccagacagaataaccaacaagaggctagtggaaagattataaaaggcatactt
ctcaataaagatttgcgtaaaaatacttccatggttcaatttaatacacgtaaccaggtt
ttatatcaagagaaggataaaaaagtacctcattcaccaaaagagaagacttttcttgat
gcaaatggaaataattccgttaagactgagaagcaggagaagcgtgcaagaaataagggt
agacctgagcgcggtgtttggactgctcttagtcggtcagagggatcaaatgcaagtaat
gagtcattgccatctgctaattcggtgcattcacagtcattagatcctagagaaggaggt
caaggagattcaaagaagaacatgttggcttcgaagagggaagagctcaagcacgttggc
aggggacatcatatttcagttgataatagttcttataaacacagtggtcgccatgggctt
caacataatggaaaggatacagatggccctatgatcattggggaaggaaaaccttttaaa
aaggggctttcttctggatatagctctcacgagaaacaggtttgggttcaaaaatcaagt
tctggatcttag
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