Daucus carota (carrot): 108208844
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Entry
108208844 CDS
T05350
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108208844
09123 Folding, sorting and degradation
03018 RNA degradation
108208844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108208844
03041 Spliceosome [BR:
dcr03041
]
108208844
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108208844
mRNA degradation factors
5'-3' decay
Lsm complex
108208844
Spliceosome [BR:
dcr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108208844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
108208844
NCBI-ProteinID:
XP_017234905
UniProt:
A0A166DN70
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Position
2:complement(39947038..39953928)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtagaaaagaaactgttcttgatttagccaagtttgtcgacaagggagttcaa
gttaagcttactggcggaagacaagtgacaggaacacttaaaggatatgatcagttattg
aaccttgtgttggatgaagctgtagagttccttagagatgcagatgatccactgaaaaca
actgatcagaccaggcgcctgggcttgatagtttgtagaggaactgctgtgatgctggtt
tctcctactgatgggacggatgagatcgcaaacccctttgtgcagccagatggagcatag
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