KEGG   Daucus carota (carrot): 108208844
Entry
108208844         CDS       T05350                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03018  RNA degradation
dcr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108208844
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108208844
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dcr03019]
    108208844
   03041 Spliceosome [BR:dcr03041]
    108208844
Messenger RNA biogenesis [BR:dcr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108208844
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108208844
Spliceosome [BR:dcr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108208844
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 108208844
NCBI-ProteinID: XP_017234905
UniProt: A0A166DN70
LinkDB
Position
2:complement(39947038..39953928)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtccggtagaaaagaaactgttcttgatttagccaagtttgtcgacaagggagttcaa
gttaagcttactggcggaagacaagtgacaggaacacttaaaggatatgatcagttattg
aaccttgtgttggatgaagctgtagagttccttagagatgcagatgatccactgaaaaca
actgatcagaccaggcgcctgggcttgatagtttgtagaggaactgctgtgatgctggtt
tctcctactgatgggacggatgagatcgcaaacccctttgtgcagccagatggagcatag

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