Daucus carota (carrot): 108208888
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Entry
108208888 CDS
T05350
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108208888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108208888
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
108208888
SWR1 complex
108208888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
DBINO
HDA2-3
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
108208888
NCBI-ProteinID:
XP_017234960
LinkDB
All DBs
Position
2:complement(43182473..43198909)
Genome browser
AA seq
2033 aa
AA seq
DB search
MASKGPKSKFDHEPRTKRQKALEPPKDPGRPKTHWDHVLEEMVWLSKDFESERKWKLALA
KKVAIRASKGMLDQATRGERRVKEEEHRMRKVALNISKDVKKFWIKIEKLVVYKHQLEVG
EKKKKAQNKQLEFLLGQTERYSTMLAENLVASPVPGHSYSNQEHLSIQNFESKSDLADND
EDYDAASEGQLEDDEHTIEEDEALITAEERQEELAALHSEIDLPLEELLKRYGVQKESCE
NSPEKKAGGAISTQATGDSQSNENDVSTEFCTEGGSIDAASVRRCEESNGRLSISEKLAA
KVDAVKARNTSASVQELGNNHTAYDFSDEQEDGDFVLANGDEKDDETTLSEEECIANAES
NNATDEIALLQKENEIPIEELLARYKKIRSTGDETEDDSGSEYASSENLSDASAEQTTNV
ELQPVPVEVSDEPNERSPVMSPVSREQEAQPDQNSDEAGENESRIADAAAAARSAQPTGN
TFSTTKVRTKHPFLLKFSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAH
LACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGCAKERKIKRQGWLKPNSFH
ICITTYRLVIQDSKIFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNTKRRILLTGTPLQ
NDLMELWSLMHFLMPHIFQSHQEFKDWFSNPISGMVDGQEKVNKEVVDRLHNVLRPFILR
RLKRDVEKQLPMKHEHVIYCRLSRRQRNLYEDYIASSETQATLASSNFFGMISVIMQLRK
VCNHPDLFEGRPIVSSFDMNAIDTQLSSSVCSIFTPSPFSEVDLSGLGLLFTHLDFYMNS
WESDEVQAIATPSSLIEGRASLENYEQITSGFRHMKKAHGGNIFEEIQQAIFEERIKEAK
ERAKAISWWNSLRCRKKPIYSMNMRELVTIRNPLYGIDRTEGTTPSYLNSSVLANIILSP
VERFHKMVDQVESFMFAIPAARAPTPVCWCSRTGSSLFVQPGYKERCAELLSPLLTPIRP
AIVRRQVYFPDRRLIQFDCGKLQELSILLRRLKSEGHRALIFTQMTKMLDVLEAFISLYG
YTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGVNLVGADTVIFYDSDWNPA
MDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTDFFKK
LDPIDLFSGHRTIPSKQIQMEDLSDDKIQVSFSNADVDAALKNAEDEADYMALKKVEQEE
AVENQEFTEEAVGRLDDDEVVNEEDGHVSAVNTGLAKTSNREHCEMITAGDMIGEGAITL
AGQEDDVDMLADVKQMAAAAAAAGQEILSFESQLRPIDRYAVRFLELWDPIIDKAAVESQ
VRFEETEWELDRIEKLKEDMEAEIDDDEEPFVYEQWDAEFATEVYKQQVEALAKHQLMEE
LEMEAKEKERADHEYSDSMQNDYAVTPKPKSKKKKRKTKFKSLKRGALVSESRAVKEESP
IEFVSEPMSIDDDDDPEFNTSSDRIPAPTSVDKKRKAGPSSNNSKKAKKTKKTPAEISPS
ALDFNMFSKQQDEPKDIDIEHKPISRTKMGGKISITSMPVKRVLTIRPEKMKKKGSMWSK
DCFPSPDTWMPAEDAVLCAVVHEYGPHWSLVSEVLYGITAGGYYRGIFRHPVHCCERFRE
LFQRYILSSTEIQNDKLNNAGSGKSLLRVTEDNVRLLLGAVSELPDNEPLIQKHFFALLS
SVWRASSGRYKKHSNSTSEASFYPGARFLPSAVNHISRTVTAGTSSRMNFANLSTSKKLV
AAALHDVDATSRHDGVAILGSRGEDSSVMDELVISLELPDRGTSDPVMLPSIVNVSICGP
EQSPSTCTDAGGNKIRYSLVAENRFRTSCESRESRGEDCMAPNSSFSSSLDVELRMPLKV
QSLGKHKLPISEPVKSAKSKVRKTITESSVVQCAVGDPVFRQVMVATRDSDSRFDMIAPD
VGTTSYESGSSFDLEDLLTSDLTCSEMSMHYYDPGLTSGLEDYSSFSDFTDIG
NT seq
6102 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaaaggtccaaaatctaaatttgaccatgagccccgcactaagcgacaaaag
gcacttgaaccacctaaagatcctggacgccccaaaacacattgggatcatgttctagaa
gaaatggtgtggctatcgaaggattttgagtctgagagaaaatggaaactggccttggca
aagaaggttgctataagagccagcaaaggcatgttggatcaggccacaaggggagaaaga
agagtgaaggaggaggagcatcgaatgagaaaagttgctctcaatatatcaaaagatgtg
aagaaattttggatcaagattgagaagctggtggtctacaaacatcagcttgaggttgga
gaaaaaaagaaaaaagcacagaataaacaacttgaattcctcttggggcaaacagagagg
tactcaacgatgttggcagaaaaccttgttgcctcgccagttccaggacattcttattca
aatcaagaacacttgagcattcaaaattttgaatctaaatcagatcttgcggataatgat
gaagattacgatgcagcatctgaagggcaattagaggatgatgaacatactattgaggaa
gatgaggcccttattactgctgaggaaagacaagaggaacttgcagctttgcacagtgaa
attgatctacctcttgaagagctacttaagcgttatggagtgcagaaagagagctgtgaa
aatagccctgaaaagaaagcaggaggagctatatctactcaggcaacaggtgacagtcaa
agtaacgagaatgatgtatcaactgaattttgcactgaaggaggcagcattgatgcagca
tctgttcgtcgttgtgaggagagtaatggtaggttatcaatttcagaaaagcttgctgca
aaagtagatgctgtaaaagcaagaaatacaagtgcgtctgttcaagagttgggaaataat
catacggcatatgatttcagtgatgaacaggaggatggtgacttcgttcttgcaaatgga
gatgaaaaggatgatgagacgacattgtccgaggaagaatgcatagcaaatgctgaatca
aataatgccacagatgagatcgcattgttgcagaaggagaatgaaattcctatagaagaa
ttgcttgcaaggtataaaaagatccggagtactggtgatgagacagaggatgactctggg
tctgagtatgcttcttctgaaaatctttcggatgcttcggcagagcaaactactaatgtg
gaactgcaacctgttcctgttgaagtaagtgatgagcccaacgaacgtagccctgtaatg
tctcctgtttccagagaacaagaagcacagcctgatcagaatagtgatgaagcaggggag
aatgagagcaggattgctgatgcagctgccgctgcaagatcggcacaaccaactggaaat
acattctcgaccactaaagttcgcacaaagcaccctttcctcctgaagttctctcttcgt
gagtatcaacatattggccttgactggcttgtgacaatgtatgagaaaagactgaatgga
attttagctgacgaaatggggctggggaagacaataatgactattgcactgcttgcgcac
ctagcatgtgaaaaagggatatggggccctcatcttattgttgttccaacaagtgtaatg
ctgaattgggaaactgaatttctcaaatggtgtcctgcttttaagatactaacttatttt
ggatgtgcaaaagaacggaaaataaaaagacaaggatggctgaaaccaaattccttccat
atatgtataacgacataccgactagttattcaagattctaaaatcttcaagaggaagaag
tggaaatacttgattttggatgaagctcatttaataaaaaactggaaatctcaaaggtgg
cagactcttctgaatttcaacacaaagcggcgaatccttttaacaggcactcctttgcag
aatgatttgatggaactatggtcgcttatgcattttttgatgcctcacatttttcagtcc
catcaagaatttaaggactggttcagcaacccaatatcaggaatggtagatggtcaagaa
aaggtaaacaaagaagttgttgataggttgcacaatgttcttcgtccctttattctccgt
cgattgaaaagggatgttgagaagcaactaccaatgaaacatgaacatgtcatatactgc
agactctctaggagacagcggaacttgtatgaagattatattgctagctcagagacacaa
gcgactctggcgagctccaatttctttggaatgatcagtgttataatgcaacttcgcaaa
gtttgtaatcatcctgatctttttgaaggtcggccaattgtcagttcatttgatatgaat
gccattgacacccaattgagttcttctgtttgctcaatctttacaccaagtccattttcg
gaagttgatctcagtgggttgggattattattcacccatctagatttttacatgaactct
tgggagagtgatgaagttcaagctattgccaccccttcaagcttaattgagggacgggct
agcctggagaattatgagcaaatcacttctgggttcaggcatatgaaaaaggcacatgga
ggaaacatttttgaagaaattcaacaggcgatcttcgaggagagaattaaagaagcaaag
gaacgggcaaaagcaatttcctggtggaattccttgcgatgcaggaaaaagcctatatat
tcgatgaatatgcgagaacttgtaacaatcagaaaccctctctatggcattgacaggact
gaggggacaacgccttcctatttgaactcttctgtgcttgctaacattattttatctcct
gttgaacggttccataaaatggttgatcaagttgagagtttcatgtttgcgattcccgca
gcacgggccccaacccctgtttgttggtgcagtagaactggaagttctctttttgttcaa
ccaggatataaggagagatgtgctgaactcttgtcaccccttctgacacctattcggcct
gcaattgtgaggaggcaagtatatttccctgataggagactaattcagttcgactgtggt
aagctgcaagaactttccattttgttgaggagactgaaatctgaaggtcacagagcgctg
atttttacacaaatgactaaaatgctggatgtcctagaggcctttattagcttatatggc
tacacctacatgcgcttggatggctccactcagccggaggagaggcaaacattgatgcag
cggtttaacacaaatccaaagtattttctcttcatattgtcaacacgaagtggtggtgtt
ggtgtcaatttagtcggggcagatacagttatcttttatgatagtgattggaaccctgct
atggatcaacaggctcaagatcggtgccaccggataggacagacacgtgaagtacacatt
tatcggttaatcagtgagagcactattgaagaaaatattttgaagaaagcaaatcagaag
cgcgctcttgatgatttggtcatacagagtggaggctacaatacagatttttttaagaaa
ctagatccaattgatttgttttctggccatagaacaattccttcgaagcagattcagatg
gaggatctaagtgatgacaagatccaagtctctttttccaatgcagatgttgatgctgcg
ttgaagaatgctgaagatgaagcagactacatggctttgaaaaaagttgagcaggaagag
gctgtcgagaatcaggaatttactgaagaagctgttgggaggttagatgatgatgaagtt
gttaatgaggaggatggtcatgtgtcagctgttaacactggtttggctaaaacatcaaat
agagaacattgtgaaatgatcactgcgggtgatatgattggagagggagctattactttg
gctggtcaagaagatgatgtcgacatgctagctgatgtcaaacaaatggctgctgctgct
gcagcagcagggcaggaaatcctatcttttgagagtcagctacgtccaattgaccgatat
gcagtacgttttctagagttatgggaccctataatagacaaggcagctgttgaatcacaa
gttaggtttgaggaaactgaatgggaacttgatcgcattgagaagttgaaggaggatatg
gaagctgagattgatgatgatgaagagccttttgtatatgaacaatgggatgctgagttc
gcaactgaagtttacaaacaacaagttgaagccttggccaaacatcagttaatggaagaa
ttggaaatggaagctaaagagaaggaacgcgcagatcatgaatattccgactccatgcag
aatgattatgcggttactcctaaacccaagtccaaaaagaaaaagaggaaaaccaagttc
aaatctctaaagagaggagcactggtttctgaatcaagagctgtaaaggaagagtcacct
atagaattcgtttctgagccgatgtctatagatgacgatgacgaccctgagttcaatacc
tcttcagacaggataccagcacctaccagtgtagacaagaagcgtaaagcaggaccaagt
agtaataattcgaagaaggccaagaagacaaagaaaacccctgcagaaatttctccatca
gctttggatttcaatatgttcagtaagcagcaggacgaaccaaaagatattgatattgaa
cataagccaataagtaggaccaagatgggaggtaaaatctcaattacatcaatgcctgtg
aagcgggttcttaccataagaccagagaaaatgaaaaagaagggaagtatgtggtctaaa
gattgcttcccttctccggatacttggatgccggctgaagatgcagtactatgtgctgtt
gtacatgaatatggtccacactggagcttggttagtgaggtcttgtatgggattactgct
ggtggttattacaggggaatctttaggcatcctgtccattgttgtgaaaggtttagagaa
ctcttccaaagatacatcttgtcatcaacagaaatccagaatgacaagctaaataatgca
ggttcaggaaagtctcttcttagagtaacagaggataatgtacgcttgttattgggtgct
gtttccgagcttccggataatgagcctctcattcaaaagcacttttttgcgttgctttct
tctgtctggagagcgtcatctggccgctacaaaaaacacagcaactcaacttctgaggct
agcttttacccaggtgcaaggtttcttccttctgcggtgaatcatatatccagaactgtt
acagctgggacatcatcaagaatgaactttgctaatctcagcacaagtaaaaagctagtt
gcagctgccctgcatgatgtagatgctacatcacgacatgatggagttgccatcctcggc
tctaggggtgaggattcaagtgttatggatgagctggtgatttcgcttgaacttccagat
agggggaccagtgacccagttatgttgccatccattgtaaatgtgtcaatatgtggccct
gaacaatctccgtcaacatgcacggatgctggtggtaataaaattagatattctcttgtg
gctgaaaacagattcaggacctcttgtgaatctagagaatctagaggtgaagattgcatg
gcaccgaattcatctttttcatcatcactagatgtggagttacggatgcctttgaaagtg
caatccctaggaaaacacaagctgcctatctctgagcctgtaaagtctgctaagtcaaaa
gtgaggaagactatcacagaatccagtgtcgtgcagtgtgcagttggtgatccagttttc
cgacaagtaatggtggcaacaagagatagtgattcaaggtttgatatgatagctccagat
gttggaaccactagttatgaaagtggttcatcttttgacctcgaagacttgttaacatcg
gatttgacatgttctgaaatgtccatgcattactatgatcctggtttaacttcagggtta
gaagattattcatcattttcagactttactgacattgggtaa
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integrated database retrieval system
