KEGG   Daucus carota (carrot): 108208987
Entry
108208987         CDS       T05350                                 
Name
(RefSeq) cullin-4
  KO
K10609  cullin 4
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03420  Nucleotide excision repair
dcr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108208987
  09124 Replication and repair
   03420 Nucleotide excision repair
    108208987
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dcr04121]
    108208987
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108208987
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dcr04147]
    108208987
Ubiquitin system [BR:dcr04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     108208987
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      108208987
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      108208987
Exosome [BR:dcr04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   108208987
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 KCNQ_channel
Other DBs
NCBI-GeneID: 108208987
NCBI-ProteinID: XP_017235141
UniProt: A0AAF0WIC4
LinkDB
Position
2:complement(53323879..53334843)
AA seq 820 aa
MSNPHSSSSSSTNSNKRSSSSSSSNLAAGEAPYFSPMKKAKSQAVACSLDSNKNGHVRFD
DNDAMIDDPNPNDPSPSVIRASAGGITSNLARKKATPPQPAKKFVIKLNKAKPTIPTNFE
ETTWETLKSAITAIFLKQPDPCDLEKLYQAVNDLCLHKMGGSVYQRIEKECETHISAALQ
SLVGQSEDLVVFLSLVEKCWQDFCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFR
KHLALASEVEHKTVFGLLKMIESERRGEAVDRTLLNHLLKMFTALGIYSESFEKPFLEGT
SEFYAAEGAKYMQQADVPDYLKHVEIRLHEEHDRCVLYLDIGTRKPLVATAERQLLERHI
SAILDKGFTMLMDGSRIEDLQRMYVLFCRVDALESLRHALNSYIRKTGQGIVMDEEKDKD
MVSCLLEFKASLDTILEDSFSKNEAFCNTVKDAFEHLINLRQNRPAELIAKFLDEKLRAG
NKGTSEEELEGMLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLK
TECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPM
DVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGRKELAVSLFQTVVL
MLFNDAEKLSFQDIKDATSIEDKELRRTLQSLACGKVRVLQKLPKGREVDDNDSFSFNDQ
FAAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITEL
FQQLKFPIKPSDLKKRIESLIDREYLERDKSNPQIYNYLA
NT seq 2463 nt   +upstreamnt  +downstreamnt
atgtctaacccacacagcagcagcagctcctccaccaactctaacaaacgctcctcttct
tcttcgtcttccaatctcgccgccggcgaagcgccgtatttttctccgatgaagaaagct
aagtctcaggccgtcgcttgttcgctcgattccaacaagaacggccacgttcgattcgat
gacaacgacgctatgatcgacgatcctaatcctaatgatccttctccgtcggttattaga
gcttcggccggggggattacgtctaatttggcgaggaagaaggcgacgccgcctcagccg
gcgaagaagtttgttattaagcttaataaagctaaaccgacgatacctacaaactttgag
gagactacatgggaaacattgaagtccgcaattaccgccattttcttaaagcaaccagat
ccatgtgatttggagaagctctatcaggctgtcaatgacctttgcctgcacaaaatgggg
ggaagcgtttatcagcgaattgaaaaagaatgtgagacacacatctctgctgctttacaa
tcattagttggacagagtgaagatcttgtggttttcttatcacttgttgaaaagtgctgg
caagatttctgtgatcagatgttgatgatccgaggcatagcattgtatcttgatcgcact
tatgtgaagcagactccaaatgtgcgttcattgtgggacatgggtttgcagctgtttcgc
aaacatcttgccctagcttcagaagttgaacataaaactgtatttggtcttcttaaaatg
atcgaaagcgagagacgaggtgaagcagttgataggactctccttaatcatcttttaaag
atgttcactgcattaggaatttattcagaaagctttgagaaaccattccttgaaggcact
tccgagttctatgctgctgaaggagcaaaatacatgcagcaggctgatgttcctgactac
ctgaaacatgtggagataaggttgcatgaggaacatgacagatgtgtactttacttggat
attggtacaagaaagccccttgtagcaaccgcagaacgacaacttcttgagcgccatatt
tctgcaattcttgataagggtttcactatgctgatggacggcagtcgcattgaggacctt
caaagaatgtacgttcttttctgcagagttgatgcccttgaatcacttaggcatgcactt
aactcatatatcagaaagactggacaaggaattgttatggatgaagagaaggacaaagat
atggtatcttgccttttagaatttaaggcatctcttgatacaatattggaagatagcttt
tctaagaatgaagctttttgcaacacagtcaaggatgcatttgagcatctcattaatctt
cgccagaaccgtcctgctgaattgattgctaagttcttggacgagaaactccgtgccgga
aataaaggtacatcagaggaagaattggaaggaatgctcgataaagtattggttctgttc
agattcatacagggtaaagatgtatttgaagctttttataagaaggacctagctaaaagg
cttctattaggaaagagtgcttccattgatgcagaaaaatcaatgatatctaagctgaag
acagagtgtggcagtcagtttacgaacaaacttgaagggatgttcaaggacattgaactg
tcaaaggagataaatgaatcttttaagcagtcatctcaagctaggacaaagctcccatct
ggaattgagatgagtgttcatgttctaacaactgggtactggccaacataccctcctatg
gatgttcggcttccacatgaactcaacgtctaccaggacattttcaaggaattctacttg
agcaagtatagtggaaggcgattaatgtggcaaaactcactgggtcactgtgtcttaaaa
gcagagtttcccaaaggtagaaaggaactggcagtttctctatttcagactgttgttttg
atgttatttaatgacgccgaaaagcttagctttcaagatatcaaggatgcaactagcatt
gaggataaggaacttagaagaactctacaatctcttgcttgtggaaaagttagagttctc
caaaagcttccaaaagggagagaagtggatgataatgattcattttcattcaacgatcag
tttgctgctcctctctataggataaaggtaaatgcaatccagatgaaggaaacagtagaa
gagaacacaagcaccactgaaagagtgtttcaggaccgccaatatcaggttgatgctgct
atcgttcggataatgaagacaaggaaggtgttaagtcatactttgctgataactgaactc
tttcagcagcttaaatttccgataaaaccatctgatttgaagaaaaggattgagagcctc
attgacagagagtacctggagcgggacaaaagcaatcctcaaatatacaattacctggca
tga

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