Daucus carota (carrot): 108209007
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Entry
108209007 CDS
T05350
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 23
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108209007
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
108209007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
SNARE
Motif
Other DBs
NCBI-GeneID:
108209007
NCBI-ProteinID:
XP_017235173
LinkDB
All DBs
Position
2:48710969..48729419
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AA seq
1608 aa
AA seq
DB search
MLRAPSANNSQSNPPDMDTNHQRASRAYQFHPARPVIIDLFNLYLGRNNRQKADDAREPP
NKSQKRVSANRELPPRNEQFLIDFEQLQSQFSDQEQLRAVTESVLISLVIQCSGHAPRAE
FLLFALRSLCSIGYINLDTFLSSLLSSVTAAELSVSQGSQMMSPLSGSTSHPGVLPSSGL
ISNVSNYQSTNPASPLHSVHGIGSPAQSANELSSRGPSIPMNSSDHTSNGQQSMTRVSMS
ARDNAISSLRQLCCKIILIGLKTNLKPVTHAEIFYHMLNWLVNWDQRQQGSDDSDSIRSC
KPDKSLIECLHSCLDVIWLLVEDDKCRVPFYELLRNCLQFIENIPDDEALFTLILEVHRR
RDMMAMHMQMLDQHLHCPSFGTNRYIPQAITNIAVDQVTSVRFSPITYPSVLGEPLHGED
LATSIEKGSMDWERAMRCIRHAIRNTPSPDWWKRVLVVAPCYRQQSQTPTGGAVFTTEMI
CEAAIDRIVELLKLTNSGSDVNCWQEWLIFADLFHFLMKSGCLDFVDFVDKLVVRLADGD
QVILKTNHVTWLLAQIIRVDLVLNALNTDHRKVETTRKMLSFHKEERSSDPNSPQSILLD
YISSCQNLRVWSLNTATREILNNEQLQKGKQIDEWWKQTNKGEFMMEYMNMDDRSTGMFW
VVSYTMAQPACDTVLSWLTSGGTESLPASNLQANDRITVIREVNPVPVSLLSGLSMNMCM
KLATQLEEVMFNGQAVASIALVETYARLLLIAPHSLFRLHLSHLTQRNPATLTRPGASLL
VLELLNYRFLSLYRYLGKSKPLMYDVTKIIANLKGKRGEHRTFRLAENLCINLLLSLKDF
YVVKKEGKGPTEFTETLNRITIMSLAIIIKTRGVADADHLLYLQPMLEQILTNSSHTWSE
KTLRHFPSLLRDTLIGRMDKRSIAIQAWQQAETTVINQCTQLLSPAADPTYVMTYISHSF
PQHRHYLCAGAWILMHGHPENINSANLARVLREFSPEEVTANIYTMVDVLLHHLQLELQR
GHSLQELMVKACANLAFFIWTHELLPLDILLLALTDRDDDPHALRIVISLLERQELQQKV
KFYLNNRGPPEHWLFSGPFKRVELQKALGNHLSWKERFPPFFDDIAARLLPVIPLVIYRL
IENDAIDAADRVLQLYSTFLHYHPLNFTFVRDILAYFYGHLPGKLILRILNVLDIKKIPF
SESFPQHINASNAAASPPLEYFATLLLGIVNNVIPPLHSLKYGPGDVRVPHNKIPTTSQP
GPTNAVEGQKAFYHIPDPGTYTQLILETAVIEILSLPVSASQIVTSLVQIVVHIQPTLIQ
SSHCLHGASSGVFSVLPTSPSGGSTDSMSASRSTPSVSGMNSSNIVSRSGYTCQQLSCLL
IQACGLLLAQLPQEFHAQLYIEATRVIKDSWWLTDGKRTLGELDSAVGYALLDPTWAAQD
NTSTAIGNIVSLLHSFFSNLPQEWLEGTNLIIKHLRPVTSVAVLRIAFRIMGPLLPRVAN
SHSLFNKLLSMLLNVLVDVFGKNSQPSTSVEASDITDLIDFLHHVIHYEGQGGPVQQNSK
PRVEVLALFGRALESLRPDVQHLLSHLKTDVNSSIYAATHPKLVQNPL
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atgctgagagctccgagtgcgaacaattcacagtccaacccaccggacatggataccaac
catcaaagagcttcacgggcttaccagttccacccggcccgacccgttatcattgatctc
ttcaatctctacttaggaagaaataatcgccaaaaggccgatgatgccagggagcccccg
aataaatcacagaaacgtgtttccgcgaacagagagcttcctcctcgcaacgaacaattt
cttatagattttgagcagctccaaagccaattttctgaccaggagcagttgcgtgcagtg
acagaatctgtactcatttcgcttgttattcagtgcagtggtcatgcaccccgtgctgaa
tttcttctctttgctttgcgtagtttgtgtagtataggttacatcaacctagatactttt
ctttcttcacttctatcctcagttactgctgctgagttatcagtaagtcagggaagtcaa
atgatgtctcctctctctggttcaacttcacatcctggggtattaccatcttctggcttg
atttcgaatgtgtctaactatcagtctacaaatcctgcatctccattgcattcagttcac
ggtattggatctcctgctcaatcagccaacgaactatcttctcgtggcccttcaatacct
atgaactcatctgatcacacatccaatggacaacagtctatgaccagagtcagtatgtca
gcacgagataatgccataagtagtttgcgtcaactatgctgcaagataatattgatcggg
cttaagacgaacttgaaaccagttactcatgctgaaattttttatcatatgctgaattgg
ctggtaaactgggaccaaagacagcagggaagtgatgattctgatagtataagatcctgt
aaacctgacaagtctttaattgaatgtcttcatagttgcttggatgtgatatggctactg
gttgaggatgataagtgtcgtgtgccattttacgaactattgcgcaattgcttacagttc
atagaaaatatacctgatgacgaggcattgttcacactcatattagaggtacataggagg
cgagatatgatggctatgcacatgcaaatgctagaccaacaccttcactgccctagcttt
ggaactaaccgatatatccctcaggccattacaaacatagcagttgatcaagtgacaagc
gtgcgattttcaccaatcacatatcccagtgtgcttggagagccattacatggagaggat
cttgctacttctattgaaaaagggagtatggactgggagagagctatgcgttgtattagg
catgctattcgtaatactccatcacctgattggtggaaacgcgtgcttgttgttgctcct
tgctatcggcaacagtctcaaactcctactggtggagctgtttttactactgaaatgatt
tgtgaggcagcaattgacagaattgttgagcttttgaagttgacaaattcaggctcagat
gtaaattgctggcaagagtggcttatttttgctgatttattccattttctcatgaaaagt
gggtgccttgattttgttgattttgtggacaagttagttgtgcgccttgctgacggtgat
caagttattttaaaaacaaatcatgtcacttggttgcttgcgcaaattattcgggttgat
cttgttttgaatgcgttgaatacggatcatagaaaggtagagacaacccgaaagatgcta
tcttttcataaagaagagagaagctccgaccctaatagtccacaaagcatccttcttgat
tatattagcagttgtcagaatctacgtgtctggtcactgaatactgcaaccagggaaatt
ttaaataatgaacaattacaaaaaggaaagcaaatagatgaatggtggaagcaaaccaac
aaaggggaattcatgatggaatacatgaatatggatgataggtcaactggcatgttttgg
gttgtctcatacaccatggcgcaacctgcatgtgatacagtgctcagttggttaacatca
gggggaacagagtcgctaccagcatccaatctacaggctaatgacagaattacggtaata
cgggaagtgaacccagtgccagtatccctcttatcagggctttcaatgaatatgtgtatg
aaattggctactcagctggaagaagttatgtttaatggacaggctgtggctagtattgcc
ttggttgaaacatacgcaagattgcttctcattgcgcctcattcattattccgtcttcat
ttaagccatttaacacaaaggaatccagctacgttaactaggccgggggcatctctttta
gttcttgaacttttaaattaccgatttctttcgctttacaggtatctaggaaagagcaaa
cccttgatgtatgatgttacaaaaataattgctaatctgaaagggaaacgtggagaacat
cgcacttttagattagcagaaaatttgtgcataaatcttcttctgtcactgaaggacttc
tatgtcgtgaagaaggaagggaagggtcctactgaatttactgaaacattgaaccgaata
accatcatgtcccttgccatcatcatcaaaacacgtggagttgctgacgctgaccacctc
ctctatcttcaaccaatgttggaacagatattaacgaatagttcgcatacatggtctgaa
aagactcttcgtcatttcccctcacttttgcgtgatacattgattgggcgcatggataaa
cggagcattgcgatacaagcctggcagcaggctgaaacaactgtgattaatcaatgcaca
cagcttctttcaccagctgctgatcctacttacgtgatgacttatattagtcatagtttc
ccccaacaccgacattatctttgtgctggagcatggatattgatgcacggccaccctgag
aatatcaacagtgccaaccttgcacgtgtcttgagagaattttccccggaagaagttact
gcaaatatatacacaatggtggatgtccttttgcatcaccttcaactagagctgcagcgt
gggcattctttacaggaacttatggtaaaagcatgtgcaaacttggcattttttatatgg
acacatgagctgctgcctctagatatattgcttctggcactaactgaccgcgatgatgat
ccccatgctttgcgtattgtgatcagtctacttgagagacaggagcttcaacagaaagta
aagttttaccttaataatcgcggcccacctgaacattggcttttctctggaccttttaag
cgtgttgagttgcagaaggctcttggaaaccatttgtcatggaaagaaaggtttcctcct
ttcttcgatgacattgctgcacgattgcttcctgtcattcccttagttatctatagactc
attgaaaatgatgccatagatgcagctgatagagttcttcaattgtattccacatttctt
cattaccaccccttaaattttacatttgttcgtgacatccttgcatatttctatggtcat
ctcccaggaaaactcattcttcgtatactgaatgtgctagatattaaaaagatccctttt
tccgagtcattccctcaacatatcaatgcctcaaatgctgcagcgtctcctccattggag
tactttgccacccttctattgggcatcgtcaataatgtcattcctcctcttcatagctta
aaatacggaccaggagatgttcgtgttcctcataacaagatcccgacaacatctcagcct
ggaccaacaaatgcagttgaaggtcagaaggcattctatcatattccagatcctgggacg
tatacccaactaattcttgaaacagcagtcatagagatactatcacttcctgtatctgcg
tcacagattgtgacatcgcttgttcaaattgttgttcacatacaaccaaccctaatccaa
tccagtcactgccttcatggagcttctagtggagtattttctgttctgccaacatcaccc
tcaggggggagcactgattccatgagcgctagtagatcaacaccttctgtttcagggatg
aactcctccaacattgtgtctcggagtggttatacgtgccagcagttatcttgcttgcta
attcaagcttgtggtcttctgttggctcagcttcctcaagaatttcatgcacaactttat
attgaggcaacacgtgtgataaaagatagttggtggcttactgatggcaaaaggaccctg
ggagagctagattcagctgttggctatgctttgctagatccaacctgggctgctcaagac
aatacctctacagccattggcaatattgtgtctttgcttcactctttttttagtaacctt
cctcaggagtggctagagggaaccaatcttatcattaaacatctcaggcctgtcacgtcg
gttgctgtgctgagaatagcatttcgtatcatgggccccctgctacctagagtggctaat
tctcacagtctgttcaataagttgctctcgatgcttttaaatgtactggtggatgtgttt
gggaagaactcacagccatcaacctcagtggaagcctcagatataacagatcttatcgac
ttcctacatcatgtcatccactatgaagggcaaggagggcctgttcagcaaaatagcaaa
cctagagtggaggttttggctctgtttggaagagcgttggaaagtttacgtccagatgtt
cagcatcttctttctcaccttaaaactgatgtgaattcttccatttatgctgctacacat
ccaaagctagtccagaaccccttgtaa
DBGET
integrated database retrieval system
