Daucus carota (carrot): 108209054
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Entry
108209054 CDS
T05350
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108209054
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108209054
REST complex
108209054
Heterochromatin formation proteins
Other heterochromatin formation proteins
108209054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
108209054
NCBI-ProteinID:
XP_017235251
LinkDB
All DBs
Position
2:complement(43736938..43748435)
Genome browser
AA seq
1377 aa
AA seq
DB search
MKRARDDLGNSPFKKPFGSTSRVELGQPHNATGGVSGNYGGGSPSEVGVGSSGGSGAAPV
QKLTTNDALSYLKEVKEMFQDKREKYDMFLDVMKDFKAQRIDTTGVIARVKELFKGHNNL
ILGFNTFLPKGYEITIIEEEDDPPKRSVEFEEAIGFVNKIKTRFQDDEKVYKSFLDILNM
YRRENKGIDEVYFEVAALFKHHADLLEEFIKFLPDASAVASEHNAKLGRQQLHLYEERGS
PLPTVRGAHMDNKQRFQRDKIVAPHMECDRSVDRHELEDNKTMIKLHKEQKKRGDKDIMD
RSNRGKEYRDPDHDMHRLSEKRKSARKVENFGGDPVPSPYDDKDALRSLYKQEFSFCDKV
KERLDANNYQSFLKCLHIYSTEIVSRSELQGLIADLLGKYPDLMAGFNDFLERCERVDGF
LHGVISKTEYFWNEGHASKAVKMEDKEKEQRRDLDAAKEKDRFKEKYWGKSIQELDLSNC
QRCTPSYRLLPEDYPIPSASQRSELGAQVLNDNWVSVTSGSEDYSFKHMRRNQYEESLFR
CEDDRFELDMLLESVSSTVKRMEELLNNISNNSVKFDSQFRIEDHFTALNLRCIERLYGD
HGLDTLDTLRKNPLHSVQILLTRLRMKLEEWSKCRLDFNKVWAEVYAKNHYKSLDHRSFY
FKQQDSKNLSAKSLVAEIKELKERSQQEDNALLSIAAGCIHPIFPNLVFKYTDTGIHEDI
YKLIKYSCDEICTSKEQSIKSMRLWCTFLEPLLSVPSRPLGIEDSEVPSASRNHGTKSAG
TSSRGREENLVVDAAAISTKLPKVVPNADVNTSPKQVNTGRLSLLHGDILVKEDGFGLPK
EPNYTGGVHKASASVGVMSSAEHPANSDAADAIDQGMKITADREATQKPTNPAAENSHGI
SCNVGDVTSLESSDSRSALKVNGAPTERTNLQKNSEDSVDPSKTEKEEGELSPHTDFEED
NFAAYGGSNILHNGKKIITTTHCRVGTGEDASCHDGGENDADADDEDSDNVSEAGVDVSG
SESAADECSREEHEEDEDGEQDEEGKAESECEAEGLDDVLTGYGSSLSPSERFLNTTKPL
AKHVASSLNDDEKRFRFFYGNDAFYVLFRLHQILYERLFSAKQPSSSAEMRLKNGKDTGS
NPYMRFMKALYDLLDGSSDNAKFEDDCRAIIGNQSYVLFTLDRLIYKLVKQLQTVANDEM
DSKLLQLYEYENSRRLEKYVDSVYYENAHVLLHDENIYRFECTSEPSQLCIQLMDDRNEK
PEVVAVSVDPNFATYFHKDFLSVVPNKKESPGILLRRNKCKSADPAKSSTICMVMEGVEV
SNGLECKMACSSSKISYVLDTEDFFCRKRYKREKAFTSPIQERGKVQKFHQFLSASI
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagcaagagatgatttggggaactctccgtttaagaaaccatttggttcgact
tctcgggtagaactcgggcaaccccataatgctactggaggtgtcagtggcaactacggt
ggaggtagtcccagtgaagtaggcgttggaagcagtggaggatctggtgctgctccggtg
cagaaacttactaccaatgacgcgttatcgtatttaaaggaagttaaagaaatgtttcaa
gataaaagggagaaatatgacatgtttcttgatgtgatgaaagatttcaaggctcagcga
attgatacaactggcgttatcgcaagggttaaagaattattcaaagggcataataatcta
atccttggttttaataccttcttacccaagggctatgaaattactattatcgaggaggaa
gacgatccgcctaagagatcggttgagttcgaagaggctataggttttgtgaacaagata
aagacacgttttcaggatgatgaaaaagtgtacaaatcttttttagacatattgaatatg
taccggagggagaataagggtattgatgaggtctactttgaggttgctgcactttttaag
caccatgctgatttgcttgaggagttcataaaatttttacccgatgcttcagcggtggca
tctgaacacaatgctaagcttggaaggcaacagttacatctatacgaggagcggggttct
cctctgccaacggtacggggggcacacatggataataagcaacgctttcaacgagacaag
atcgtcgcacctcacatggaatgtgatcgaagtgttgatcgccatgaattagaggacaat
aaaacaatgattaagttgcacaaggaacagaaaaagcgtggtgacaaggacattatggat
aggagtaaccgaggaaaagagtacagagaccctgatcatgacatgcatcgtctatctgag
aaacggaaatctgctcgaaaggttgaaaactttggaggtgacccagttccttcaccttat
gatgacaaagatgccttaagaagcctgtacaaacaagagttctctttctgtgataaggtg
aaagagaggctggatgcaaacaactaccaatcttttttgaagtgtcttcatatttatagc
actgaaatagtttcaagaagtgaattacaaggcttgattgcagatttacttggaaaatac
ccagatcttatggcagggttcaatgattttttggaacgctgtgagcgagttgatggattt
cttcatggcgtgattagcaaaacagaatatttctggaatgaagggcatgcttcaaaagca
gtgaagatggaggacaaagaaaaggagcaaaggcgggacctcgatgctgctaaagagaaa
gataggtttaaggagaaatattggggaaaatctatacaagagcttgatctctctaactgc
cagcgctgcactcctagttacaggctacttcctgaagattatcctataccatcagcaagc
cagagatctgaactgggagcacaggtgttaaatgacaattgggtgtctgtgacttcgggt
agtgaagattactcattcaaacatatgcgcagaaatcagtatgaagaaagtctctttaga
tgtgaagatgatagatttgagctagacatgcttctggaatctgtgagttctactgtcaag
cgcatggaggagctactgaacaacatcagtaataattctgttaaatttgatagccagttc
cgcatagaagaccacttcacagctcttaacctaaggtgtatagagcgtctttatggagat
cacggcctggatactttggatacactacgcaaaaaccctctccactcggtgcagatactg
ttgacccgcctaagaatgaagctggaagagtggtcaaagtgtcgtttagatttcaacaag
gtttgggctgaggtatatgctaagaatcactataagtcacttgatcatcggagtttttac
ttcaagcaacaagactcaaagaacctgagcgcaaaatccttagtggctgagatcaaagaa
cttaaggagagaagtcagcaagaggataatgcgcttctctctattgctgctgggtgcata
catcctatatttcctaaccttgtgtttaaatacactgataccggtattcatgaagacatc
tacaaactgatcaagtattcatgtgacgagatatgcacgtccaaagagcaatcaattaaa
tccatgaggctttggtgtaccttcttggagccgctgctaagtgttccttctcgacctctt
ggtattgaagattctgaagttccttcagcatcgaggaaccatggaactaaaagtgctggg
acgagtagcagaggacgagaggaaaatcttgttgttgatgctgcagcaattagcactaaa
ctaccaaaagttgtaccaaatgcagatgtgaatacttccccaaagcaagtaaatactggg
aggctaagcttgttacatggtgatatattggtcaaagaagatggatttgggctacctaaa
gagcctaactatacaggcggtgttcataaagcgtctgcatctgttggagttatgagttct
gctgaacatccagccaattctgatgctgcagatgctattgaccagggaatgaaaattact
gcagaccgtgaggcaactcaaaaacctactaaccctgcagcagaaaatagtcatggaatt
tcttgcaacgtaggtgatgtaacttcattggagagttctgattcaagatccgctctaaaa
gtgaacggagctccgactgaaagaaccaatctacagaaaaacagtgaagattcagttgat
ccctctaaaactgagaaagaagaaggtgagttgtcacctcatactgatttcgaggaggac
aactttgctgcctatggaggttctaatatattgcacaatggaaagaagattatcacaact
acgcactgtcgggtcgggactggtgaagatgcctcttgtcacgatggaggagaaaacgat
gcagatgcagatgatgaggacagtgataatgtttctgaggctggagtagatgtttcaggc
agtgaatctgctgctgatgaatgctcacgggaagagcatgaagaggatgaagatggagaa
caggacgaagaaggcaaagctgaaagtgagtgtgaagcggaagggctagatgatgtactt
actggatatggatcgtcattatctccatctgaacgttttctaaataccactaagccgctg
gcaaagcatgttgcatcttcattaaatgatgatgagaaacgatttcgatttttttatgga
aatgatgcattttatgttcttttcagactacaccaaattttgtatgaaagactattttct
gctaaacaaccttcatcttctgctgaaatgagattgaaaaacgggaaagatactggttca
aacccttatatgagatttatgaaagcattatatgatttacttgatggatcctcagacaat
gcgaaatttgaggatgattgtcgagctattatcggtaatcagtcttatgtgcttttcaca
ttggacaggttgatatataaactggtgaaacagcttcagactgttgctaatgatgagatg
gatagtaagcttctccagttatatgagtatgaaaattctcggcgattggagaaatatgtt
gattcagtttactatgagaatgcacacgtccttcttcacgatgaaaacatatacagattc
gaatgtacatctgagccatcccagttgtgcatacagttgatggacgacagaaatgaaaag
cctgaggtggttgcagtgtcggtggacccgaattttgcaacttattttcacaaagatttt
ttgtctgtggttcctaacaagaaagagtcgcctggcatcctgttaagaaggaacaaatgc
aagtctgcagatcctgccaaatcttccactatatgcatggtgatggaaggtgtcgaggtg
agcaatggtttggaatgcaagatggcttgcagctcatccaagatctcttatgtcctagac
acagaagatttcttctgtcgtaagagatacaaaagagagaaagcgttcacatccccaatt
caggaaagggggaaagtacagaaatttcaccaattcttatcagcatcaatataa
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