Daucus carota (carrot): 108209093
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Entry
108209093 CDS
T05350
Name
(RefSeq) plant-specific TFIIB-related protein PTF2 isoform X1
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108209093
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
108209093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRF2-like_C_cyclin_rpt
TFIIB
Zn_Ribbon_TF
DUF4143
ssDBP
Motif
Other DBs
NCBI-GeneID:
108209093
NCBI-ProteinID:
XP_063943092
LinkDB
All DBs
Position
2:complement(25987305..25991483)
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AA seq
534 aa
AA seq
DB search
MELSARCQSCGERSLVTDEVSENLICTTCAVVQDYNNFQAHVGGISGPAGTYVRTGTSGS
GNNYSYKESKIYKAGVLIDDILFKLNFSVPSIDEVKKMIVTITEGEYGQGDWFSIFVGAC
AYVVRRKNGNLLPMTDVAAVVCCDTYELGRMVNRVVSFLDLKLPEFDIVYLYETTLRNSP
SFSCIEAEKKEVMLKQGVFLVQCLIKWFVTTGRRPVQVVVSVLAFIGQLNQVNVKIEDLA
SELNVPAVTCRLRYKELLERLVEVARVLPWGKDVNVKNIVKFAPYVIQYMEMKSMGNGLK
QIKNSDNVGFDITYFLSDCLQERSDNMIDSYRSCEGDDVFSQNTEQEQSPSLDFANLDKF
NISPECLKMIYSKCMEEVSDFRSTSEFGKENRKKRKRHDDYLDCTDWWKGKSELSKKLSL
KKILEKDVGMDVMPPAFVNGCLTYQTRRDKIEAAKARIKNIMFPSNAGLRAGNSHCLSTT
AKKEKKKKKRHVDVDWEDLIIETLLLHQVKEEEIENGYYRTLMDLHVFNSGCFE
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggagttgtctgcacgatgccaatcttgcggcgaacggtctctggtcactgatgaagtt
tctgaaaatttaatctgcacaacatgtgctgttgttcaggattacaacaattttcaggcc
catgttggtggtattagtggcccggctggcacatatgtccgcactggcacatcaggctct
ggcaacaattattcgtataaagaaagcaaaatttataaagctggggttcttatcgatgat
atattgttcaaattgaatttttcggttccatctatagatgaggttaaaaaaatgattgta
actattactgaaggtgagtatggtcaaggtgattggtttagtatatttgttggtgcgtgt
gcttatgttgttcggaggaaaaatgggaaccttctgcctatgacggatgtggctgctgta
gtctgctgtgatacttatgagttaggaagaatggttaatcgagttgttagttttcttgac
ttgaagttgcctgaatttgatattgtttatttgtatgaaactacacttagaaatagcccg
agctttagttgcattgaagctgagaaaaaggaggtgatgttaaaacagggggtgtttttg
gtgcagtgtttaataaagtggtttgtgacaacagggagaaggccggtgcaggttgtagtg
tcagttttggcatttattggacagttaaatcaggtaaatgttaaaattgaggatttggct
agtgaattgaatgtgcctgctgtcacttgtagattgaggtataaggagttgttagagagg
cttgtggaggttgcaagagtgttgccatggggaaaagatgttaatgtaaagaatatagtg
aaatttgcaccatatgtcattcaatatatggaaatgaagtcgatgggtaatggtctaaaa
cagataaaaaattcagataatgtgggatttgacattacttattttttgagtgattgtttg
caggaaagatcagataacatgattgattcatataggtcttgtgagggggatgatgttttt
tctcaaaatactgagcaagaacaatcacctagtctggattttgctaatctggataagttt
aatatttcacctgaatgcttgaaaatgatttattccaagtgcatggaagaggtttctgat
tttcgttccacatcagagtttggaaaggaaaatagaaagaaaaggaagagacatgacgac
taccttgactgtacagactggtggaaaggcaagtcagaactcagcaaaaaactctctctc
aagaagatattggagaaagatgtaggaatggatgtgatgcctccagcattcgttaatgga
tgcttgacataccagacgagaagagataagattgaggcggctaaggcacgcattaaaaac
atcatgtttccatcgaatgctggtttacgtgctggaaacagccattgcctttcaacaact
gctaaaaaggagaagaagaaaaagaaacgacatgtagatgttgattgggaagatcttata
attgaaactcttcttctgcatcaggtgaaggaagaagaaatagagaatgggtattacaga
accttgatggacttgcatgtttttaactcaggttgttttgaatga
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