Daucus carota (carrot): 108209099
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Entry
108209099 CDS
T05350
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108209099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209099
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
108209099
mRNA cycle factors
Common to processing body (P body) and stress granule
108209099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
108209099
NCBI-ProteinID:
XP_017235333
UniProt:
A0AAF0WM59
LinkDB
All DBs
Position
2:58422766..58429847
Genome browser
AA seq
996 aa
AA seq
DB search
MTFVDTTSKMSAPSWERAQRLYDKNTELENKRRRAIQAKVPSDPNTWQLMRENYEAIILE
DHSFSEKHNVEYALWQLHYRRIEEFRAHFNAAAAASAGSVPPRSAKGPRPDRITKIRLQF
KTFLSEATGFYHDLILKIKAKHGLSLGHFSDDFETRIVFEKDEKKSIEMKKGLIACHRCL
IYLGDLARYKGLYGEGDSKNRDYAAASSYYLQAASLLPSSGNPHHQLAIVATYSGDELVA
VYRYFRSLAVESPFSTARENLIVAFEKNRKSYTQLHKDIEGSASKESPNQTNNRGKGTKE
TRLQAKEVDLDGFSERAPSIHDIYKAFCTRFVRLNGILFTRTSLDTFGEVLSLVSNLLRE
LLSSGAEELKFGLDAVDNGLFIVRLVTILIFTLHNVKREAEGQSYADILQRTGLLQNAAV
ATFELMGHIFKRCSELSDPCASQLLPGLLIFLEWLASFPDIAAGTDIDDKQVSVRSKFWD
HCVCLLNKLPLSGSMLTSDGDNDNCFFNMSKYEEGETDNRLALWEDFELRGFLPLHSAHL
ILDFSRKQSIGHDSKKEKTSRLKRILAAGKALTNLVKVDQKPLSFNVQLKRFVIGVAPQS
SEDTSSALYSAGSKSGASIKESLKAPMTDLAISQSEFELYDGDEDDEVILFRPTLSEKRH
DEISELVPPGEVVNGMNAFSDETQLYSAPLSAFEVGLHQNSAFSSGPQAPMPVTAFSSGR
QSPLPVPNFVSQQMQPNQTSSSSRNQHDFLAKDLEGWSLVESGRVIDLRMQNDMKVSNVA
SLSLPVQQIISPGYTGIYSQAVGPGTITQNQINPISSSRAPDVPNNFEFVASSGYNGGII
APKVSSALQAMSMKGPANRPVRHLGPPPGFNSVRPKQGFEPSVAMSGENPSVDNYSWLDG
YTHPSSIGHSSLKQSTGYPSHPGFLYSEEGNAPLEGARFPFPGKQVSSAQFGAEDRNGQI
PESLNLPNEQMQQQQQSVPPPQQYQGKSFLMNHRIV
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgtagatacgacaagtaaaatgtctgctccttcgtgggagcgtgctcagcgt
ctttatgacaagaatacggagttggagaataagcgtcgacgagcaatacaagcaaaagtt
ccctccgatccaaatacatggcaacttatgcgggaaaattatgaagctataatcctcgag
gaccattccttttcggaaaagcacaatgttgaatatgctttgtggcagttacattaccgg
agaattgaggagtttagagcacatttcaatgctgctgcagcagcttctgctggatctgtc
ccacctcggtctgcaaaaggtcctaggcctgatcgaatcactaaaatacgtctccagttc
aagacttttctttctgaagcaacaggattttaccatgaccttattttgaagatcaaagcg
aaacatgggctctctcttggacatttttctgacgatttcgaaactcgtattgtttttgag
aaagatgagaaaaaatctattgagatgaagaagggtctgatagcttgccaccgatgctta
atttacctgggtgaccttgcacgatataaaggtttatatggggagggtgactccaaaaat
cgagattatgcagctgcttccagttactatttgcaagctgcatctcttttgccatctagt
ggtaatcctcatcaccagctcgccattgtggctacttattccggggatgaactggtggct
gtttaccgttacttccgtagtttggctgtggagagtcccttttcaactgcaagggagaac
ttaattgttgctttcgagaagaaccggaaatcctatactcagttgcacaaagatatagaa
ggttctgctagtaaggagtcacctaaccagacaaataacagaggaaaaggaacaaaagaa
acaagactccaggctaaggaagtcgatcttgatggcttcagtgaaagagcacccagtatt
catgatatatacaaagctttttgtacgcgatttgttcgtttaaatggaatccttttcaca
cgaacaagcttggacacatttggtgaagtgctctcacttgttagcaatcttctgcgtgaa
ctgctttcgtctggcgcagaggagctgaaattcggtttagatgctgttgataatggactt
tttattgttaggctggtcactattctcatttttacacttcataatgttaaaagggaggct
gaaggtcagtcatatgcagatattttacagcgtaccggtttgcttcaaaatgcagctgtt
gctacttttgagcttatgggacacatttttaagagatgttcagagttatctgatccctgt
gcaagtcagcttttacctggactcttaatttttctggaatggttggctagctttcctgat
attgcagctggtactgacatagatgacaagcaagtttctgttaggtcgaaattttgggat
cattgtgtttgtttattaaacaagctccccttaagtggatcaatgcttacaagtgatgga
gataatgacaactgcttttttaacatgagcaagtacgaggaaggggaaactgataatcgg
cttgctttatgggaggactttgaattacgggggttcttgcccctacattctgctcacctc
atcttggatttttcaaggaaacagtccattggacatgatagcaagaaggaaaaaacttct
cgtttgaaaaggattctagcggcagggaaagccttaacaaatctagtgaaagttgaccaa
aaacctcttagctttaatgtgcagcttaaaaggttcgttataggtgttgcaccccagagt
tcagaagatactagctcagccctctattcagccggttcaaaatcaggtgctagcatcaaa
gagagtttaaaagctcccatgacagatttggcaattagccagtcagagtttgagttatat
gatggtgacgaggatgacgaagtgattttatttaggccaacattgagtgagaagcgtcat
gatgaaatatctgaattggtcccgccaggggaagtggtaaatgggatgaatgctttctca
gatgaaactcagctttatagtgctcctctttcagcttttgaagtcggtctgcaccagaat
tctgctttttcttcaggtccacaggcaccaatgcctgttactgctttttcttctggtcga
cagtcacctttgcctgttcctaattttgtgtctcaacaaatgcaaccaaatcagaccagt
tctagctccaggaaccaacatgattttcttgcgaaagacttggaaggttggagcttggtg
gaaagtggtcgtgtgattgatctcaggatgcagaatgatatgaaagtgtctaatgttgct
tcgttatctcttcccgtgcagcaaattatcagtcctggttatacaggtatatattctcag
gcagtaggcccgggaaccattacgcaaaaccagatcaacccaatttcatcttctcgggca
ccggatgtgccaaataattttgagtttgttgcatcctctggatacaatggaggcatcatt
gcacctaaggtgtcttcagcattgcaagctatgtctatgaaaggtccagccaatcgtcct
gtaaggcatttaggccctccacccgggttcaactctgttcgtccaaagcaaggttttgaa
ccgtctgttgcaatgagtggtgagaatccatcagtggataattatagctggttggatgga
tatacgcatccatcatctataggtcattcgagtcttaaacagtctactggatatccatca
catccaggatttctgtacagtgaagagggcaatgcccctttagagggagctcgtttccct
tttcctggaaaacaagtttcttctgcgcagtttggagctgaagatagaaatggacagatt
ccagagagtttaaacttgcccaatgaacaaatgcagcagcagcagcagagtgttccacca
ccacagcaataccaaggcaaatctttcttgatgaatcatcgtatcgtgtga
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