Daucus carota (carrot): 108209141
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Entry
108209141 CDS
T05350
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108209141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108209141
Spliceosome [BR:
dcr03041
]
Complex A
Other components
Complex A specific factors
108209141
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
zf-CCHC
KH_12
RRM_5
KH_PNO1_2nd
zf-CCHC_6
PHD_4
Motif
Other DBs
NCBI-GeneID:
108209141
NCBI-ProteinID:
XP_017235390
UniProt:
A0A161XK71
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All DBs
Position
2:complement(57799866..57803765)
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AA seq
799 aa
AA seq
DB search
MESQTLISQSPLDPPPTQSNRSESPPIYDHQLKQEQNPQPTESNSSEFPPSHGQYPVQVK
QEHATESNSSELPPSHGEIPIKVKQEQTTESNSSELPASHEQKPIEVKQEQGVSENNGSG
ENNSNRRRRRSRWDPQPEDGSGETKKRKSRWADDEPKPIIQLPDFMKDFAQGIDTDPEIQ
LLNARLLEISKILQAGVQLDDRPEGARSPSPEPVYDNLGIRINTREFRARERLNKERQEI
IAQIIKRNPAFKPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAK
IVIRGKGSIKEGRFGQKRDLKFDPAENEDLHVLVEADNEKSLEEAAGMVEKLLRPVDEGL
NEHKRQQLRELAALNGTIKDEEFCRLCGEAGHRQYACPSRLTTFKSEVLCKNCGDGGHPT
IDCPMKGAAGKKMDDEYKNFLAELGGTMPESSTTTKESTPLAIMGSSNTGSNPPWASSNG
SGNVGASLHPGLGSTVAKIGKEIDDTNLYIGYLPPTMDDDELIRLFQPYGDIVMAKVIKD
RVSGLSKGYGFVKYSDVAQANQATASMNGQRVDGRVIAVRVAGKPPPPVVPPGPPAPPVS
AYPGQNQGYNGYPPPQMQSGAPPGTGPPGTYIVAPVPWGPPPPPAYAAYPPPPPGSNVYS
SYPPPPMPPYGMQYPPVTQVAVSGAPAQTFSPAESQQSYSAGMQYPSSAPASNVIYGNSP
VGMPPNSQPPYPASSVGYPSYYTGIPPPPDATQSLVEQQSLASAPWAANPPPPPPPPAMP
STEPTPPDSEYEKFMAEMK
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggaatcccaaaccctaatttctcaatcccctctcgatccgcccccaactcagtcaaat
cgctccgagtcgccgccgatttacgaccaccagctcaaacaagagcaaaatccccaacca
acggagtcgaactcgtccgagttcccaccgagtcacggacaatatccggttcaggtgaaa
caagaacacgcaactgagtcgaactcgtccgagttgccaccgagtcatggagaaattcct
atcaaggtgaaacaagaacaaacaaccgagtcaaactcgtccgagttgccagcgagtcat
gaacagaagccaattgaggtcaaacaagagcaaggagtctctgagaataacggtagcggc
gagaataacagcaatcgtcggcggaggaggagcaggtgggacccgcagccggaggatggg
agcggagagacgaagaagaggaagtcgagatgggcggacgacgagccgaagccgataata
caattgcctgatttcatgaaggatttcgctcaaggtatcgatacggaccctgaaattcag
ttattgaatgctaggctacttgaaattagtaagattttgcaagctggtgtgcaattagac
gatcgtcccgagggcgctaggtcaccttctcccgagcctgtttatgataatttaggtatt
aggattaataccagagagtttcgagctagggagaggcttaataaggagaggcaagagata
attgcgcagattattaagaggaatcccgcatttaagcctcctgcggattataggccaccg
aagttacataagaagttgtatattccgatgaaggagtatccggggtataattttataggg
ttgattattggaccgagagggaatacacagaagaggatggagaaggagacgggggcgaag
attgtgattagggggaaggggtcgattaaggaggggaggtttgggcagaagagggatttg
aagtttgatccggcggagaatgaggatttgcatgttttggtggaagcggataatgagaag
tcattggaggaggctgctgggatggttgagaagttgttgaggccagttgatgaagggttg
aatgaacataagaggcagcagcttagggaacttgcggcgttgaatgggacgattaaggat
gaggagttttgtaggttgtgtggtgaggcgggccataggcagtatgcttgtccatcgagg
ttgacgacttttaagagtgaggtgttgtgtaagaattgtggtgatggtggacatccgact
attgattgtcctatgaaaggtgcggctgggaagaaaatggatgatgagtataagaatttc
ttggcggagctgggggggactatgccagagtcttctactactactaaagagagtacacct
ttggctattatgggttcaagtaacaccggaagcaatcccccttgggctagcagcaacggt
tctggaaatgttggggcctcactacatcctggattaggaagcactgtagctaagattgga
aaagagattgacgacacgaatttgtatattggttacttgccaccgactatggatgatgat
gaattgataagactgttccaaccttatggagatattgtaatggccaaggttatcaaagat
agagtgagtggattaagtaaaggttatggttttgttaagtattctgatgttgctcaggcc
aatcaggcaactgctagcatgaatggtcaacgcgtagatggaagagtaattgctgttaga
gtggcaggaaaaccacctccacccgttgtaccccctggacctcctgctccacctgtttct
gcttaccctggtcaaaaccagggatataatggatatccacctccacaaatgcaatcaggt
gctccacctggtactggaccacctggaacttacattgttgctccagttccttggggtcct
cctccacctcctgcttatgctgcttaccctcctccccctcctggatcaaatgtgtactcc
tcatacccacctccaccgatgcctccctatgggatgcaatatcctccagtgactcaagtt
gccgtctctggggctccagcccaaaccttcagtcctgcagaatcccagcaaagctattct
gctggaatgcaatatccgagcagcgcacctgcatctaatgttatatatggaaattcacca
gttggcatgccacctaattcgcaaccaccttaccctgcatcttctgtgggttacccctcc
tattatacaggaattcctccacctccggatgcgacccaatctttggtggaacagcaaagt
cttgcaagtgctccatgggctgcaaacccaccaccgcctccacctccacctgccatgcca
tctactgaaccaactccaccagactctgaatatgagaagtttatggctgagatgaaatga
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