Daucus carota (carrot): 108209174
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Entry
108209174 CDS
T05350
Name
(RefSeq) histone deacetylase complex subunit SAP18
KO
K14324
histone deacetylase complex subunit SAP18
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108209174
03015 mRNA surveillance pathway
108209174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209174
03036 Chromosome and associated proteins [BR:
dcr03036
]
108209174
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108209174
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108209174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAP18
Motif
Other DBs
NCBI-GeneID:
108209174
NCBI-ProteinID:
XP_017235445
UniProt:
A0AAF1AQH6
LinkDB
All DBs
Position
2:complement(45299964..45304423)
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AA seq
156 aa
AA seq
DB search
MDGQRRGGRGYNSGPGRNPPGAPPPPPPKSLNQEPIDREKTCPLLLRVFTKVGGHHSNEE
FSVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRDATLSFAFVYPSKTGRLVVRE
VGRTSSVPNPRRPDDSKLALRDVDFEIGDYLDVAIL
NT seq
471 nt
NT seq
+upstream
nt +downstream
nt
atggacgggcagagaagaggcggaagaggttacaattcgggtccgggtcggaacccaccc
ggagctcctcctcctccccctcctaaatccctcaatcaagaaccaatcgatcgcgaaaag
acatgcccgctattgcttcgtgtatttactaaggttggcggtcatcattctaatgaagag
ttttcagtgagggggaaggagcctaaagatgaggtccaaatttatacatggaaggatgct
acactacgcgagctaactgatctagttaaagaggttgctccagaggccagaagaagagat
gcaacgctgtcctttgcttttgtatatcctagtaaaactggtcggcttgttgttagagag
gtcggaagaacatcttctgttccaaatccaagaagaccagacgatagtaaattggcattg
agggacgttgactttgagattggagattacctggatgtggcgattctgtag
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