Daucus carota (carrot): 108209293
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Entry
108209293 CDS
T05350
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108209293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108209293
03009 Ribosome biogenesis [BR:
dcr03009
]
108209293
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108209293
Spliceosome [BR:
dcr03041
]
Complex A
U2 snRNP components
U2 related factors
108209293
Complex B
108209293
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108209293
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
90S particles
Helicases
108209293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
AAA_30
Flavi_DEAD
T2SSE
AAA_7
SLFN-g3_helicase
PhoH
TrwB_AAD_bind
TsaE
AAA_29
Motif
Other DBs
NCBI-GeneID:
108209293
NCBI-ProteinID:
XP_017235606
UniProt:
A0A161X1R0
LinkDB
All DBs
Position
2:complement(17779092..17783820)
Genome browser
AA seq
723 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSAISKLNKTNGAVSNSVNSLINRWNGRPFSQRYYDILEKRKTL
PVWHQKDEFFKALKENQTLILVGETGSGKTTQIPQFVLEAVELESQDKRKKYIIGCTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSRTVLKYLTDGMLLREAMTDPLLERY
KVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPG
RLHPVEIFYTQEPERDYLEAAIRTVIQIHTCEPPGDILVFLTGEEEIEDACRKITKEIGN
FGDTAGPALVVPLYSTLPPAMQQKIFDPAPPPLTPNGPAGRKIVVSTNIAETSLTIDGIV
YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFQNDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGN
LTRLGEIMSELPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNSDDQSWCYENFVNHRALKSADNVRQQLARIMARFNLK
LCSTDFNSRDYYINIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWV
IYNEYVLTTRNFIRTVTDVRGEWLIDIAPHYFDLANFPQCEARRVLEKLYKKREREADAK
TKK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagagcggaagcgaaaagtgagcttgttcgatgtggttgatgatagtgcaatc
tccaagctcaacaaaacaaacggcgccgtttcgaatagtgtcaattcgctgattaatcgg
tggaatgggaggccgttttcgcagagatattatgatattctggagaagaggaagactttg
cctgtttggcatcagaaagatgaattctttaaggctttgaaggagaatcagacgctgatt
cttgttggggagactgggagtgggaagactacgcagattcctcaatttgttctggaagct
gttgaattggaaagccaagataaacgtaagaagtacataattggttgcacccagcctcgt
agggttgcagcaatgtcggtttctcgtagagttgctgaagagatggacgtaactattgga
gaagaagttggttatagcatccgttttgaagattgcagcagttcacgaactgttctaaag
tacttgacagatggtatgctattaagagaagcaatgacagatccacttcttgaaagatat
aaagtgataattcttgatgaagctcatgaaaggactttggcaacagatgttctattcgga
cttttaaaggaagtattgaaaaatagacctgatctgaagctagttgtgatgagtgctact
cttgaggcggagaagtttcagggttacttctttggggcacctttgatgaaggttccagga
agactacacccagtagagatcttctatacgcaggagcctgagagggactaccttgaagca
gcaattcgtacagttattcaaatacatacatgtgaacctcctggtgatatactagtcttt
cttactggggaggaggaaattgaagatgcctgtcggaagataacaaaggaaatcggcaat
tttggagataccgctggacctgcattagttgtgcctctgtactccacacttcctccagct
atgcagcagaaaatatttgatcctgctcctcctcctttgacaccaaatggtccagctgga
aggaagattgttgtctccacaaacattgccgaaacgtctttgactattgatggcatagtt
tatgtcatagatcctggatttgctaagcaaaaagtttataacccacgagtgcgtgttgag
tctttgctggtttcaccaatatcgaaggcaagtgcccaccagaggtcaggtcgtgcaggc
agaacacaaccaggaaagtgttttagactatacacagagaaaagcttccaaaatgatctc
cagcctcagacataccctgagattctaaggtcaaaccttgcaaatacagttctcacttta
aaaaaattaggtatagatgatctggtccattttgattttatggaccctcctgccccagag
acactaatgcgtgcattagaggttctgaattacttgggagccttggacgatgaaggaaat
ttgaccaggctgggtgaaatcatgagcgaattgccccttgacccacaaatggggaagatg
cttgttgtcagcccggagttcaactgttcgaacgagattttgtctatatcagctatgctt
tcagtacccaattgctttgtacggcctagagaagctcagaaagctgcagatgaagctaaa
gctcggtttggccacatagacggggatcatctcacactcttgaatgtgtaccatgcttac
aaacaaaacagtgacgaccagtcatggtgttacgagaattttgtcaaccacagggcactc
aagtctgcagataatgtgaggcagcagctagctcgcatcatggctaggtttaatttaaaa
ctctgcagcactgacttcaacagccgggactactacatcaacattagaaaggccatgtta
tcgggatatttcatgcaggtggctcacttggaacgtactggacactatttaactgtcaaa
gataaccaggtggttcatctacacccatcaaattgcctggatcacaaaccagagtgggta
atttataacgagtatgtcttgacaaccaggaattttatccgcacagtaacagatgttcgt
ggtgaatggttgattgatattgcaccacactactttgatcttgcaaactttcctcaatgt
gaagcaaggcgtgttcttgaaaagttgtacaaaaagagggagcgagaggcagatgcgaaa
accaaaaagtag
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integrated database retrieval system
