Daucus carota (carrot): 108209396
Help
Entry
108209396 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108209396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209396
03036 Chromosome and associated proteins [BR:
dcr03036
]
108209396
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108209396
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108209396
mRNA degradation factors
5'-3' decay
Decapping complex
108209396
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108209396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
108209396
NCBI-ProteinID:
XP_017235760
UniProt:
A0A161XGI3
LinkDB
All DBs
Position
2:45507229..45514291
Genome browser
AA seq
487 aa
AA seq
DB search
MNSRGRFPPGLAGGRGGNFNPNPNYQNRNYQHQNHQGQRNSNSNVQVHQQQQFQQQQWLR
RNPGGADSGNDEVEKTVQSEAVDSGSQDWKAQLKLPPQDTRYRTEDVTATKGNEFEDYFL
KRELLMGIYEKGFERPSPVQEESIPIALTGSDILARAKNGTGKTAAFCIPALERIDQDKN
VIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLVGTPG
RILDLAKKGICDLKNCGMLVMDEADKLLSPEFQPSIQHLISFLPTNRQILMFSATFPVTV
KDFKDRYLQKTYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSV
NRVELLARKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN
VVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQI
DQAIYCQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaattctcgaggtaggtttccgcccggactcgccggcggccgcggtggcaattttaac
cctaaccctaattatcaaaacagaaattatcagcaccaaaatcaccaggggcagaggaat
agtaatagtaatgtgcaggtgcatcagcagcaacagtttcagcaacaacagtggcttaga
aggaatccagggggagcagattcgggtaatgacgaggtcgagaagactgtgcaatcggaa
gctgtggattctgggtcacaagattggaaggcacaactaaagcttcctcctcaggatact
cgctaccggacagaggatgtgacagccaccaaaggaaatgaatttgaagactattttcta
aaacgtgaactactaatgggaatatatgagaagggtttcgagaggccatctcctgttcag
gaggaaagcattcctattgctctaactggtagtgatattcttgcaagggctaaaaacggt
acaggaaaaacagccgccttttgcattccagcattggaaaggatagatcaagataaaaat
gtgattcaagttgttatacttgtccctactcgagaactggcccttcaaacttcacaagtt
tgcaaggagcttgggaagcatttgaaaattgaagtcatggtcacaactggtggaaccagc
ttgaaagatgacattatgcggctgtatcaacctgttcatttacttgttggtactccagga
agaatcttagatctagcaaagaagggtatttgcgatttaaaaaattgtggtatgcttgtt
atggatgaggctgataagctcttgtcgccagagtttcaaccttctatacaacatctcatt
agttttttgcctacaaatcgccaaattttgatgttttcagccacatttcctgtgacggtt
aaggattttaaggatagatatttgcagaagacctatgtaattaacctgatggatgagctt
actcttaagggaataacacagttttatgctttcgttgaagagagacaaaaagttcactgc
ctgaacacccttttctcaaagcttcagattaatcagtcaatcattttctgcaattctgta
aatcgtgtggaactgctggccaggaaaattactgagctcggttactcttgtttctatatt
catgcaaagatgcttcaggatcatcgcaacagagtatttcatgattttcggaatggtgca
tgtaggaatcttgtctgcacagatctttttacaagagggattgatattcaagctgtcaat
gttgtcatcaactttgatttccctaaaagtgctgaaacttatcttcatagggttggtcga
tccgggaggtttggacatcttgggttggcagtgaatcttattacttacgaggatcgcttt
aatttgtacaggattgaacaagagcttggaactgagatcaaacagattcctccccaaatt
gatcaggctatatactgccagtga
DBGET
integrated database retrieval system
