Daucus carota (carrot): 108209485
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Entry
108209485 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108209485
09122 Translation
03013 Nucleocytoplasmic transport
108209485
03015 mRNA surveillance pathway
108209485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209485
03041 Spliceosome [BR:
dcr03041
]
108209485
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108209485
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108209485
Spliceosome [BR:
dcr03041
]
Complex C
Other components
EJC/TREX
108209485
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108209485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
108209485
NCBI-ProteinID:
XP_017235902
UniProt:
A0AAF0WD88
LinkDB
All DBs
Position
2:complement(39122447..39128003)
Genome browser
AA seq
428 aa
AA seq
DB search
MGENKDNDAYEEELIDYEEEDEKAPDSVAAKTNGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLA
LARDKELALRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKGLPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagaacaaggacaacgacgcgtacgaagaggagctcatcgattacgaggaggaa
gatgagaaagcgcctgactccgtcgccgccaagacgaacggcgagtccgttaaaaaggga
tacgtaggcattcacagttcaggatttagagactttcttttgaaaccagaactcctgcga
gctattgtggattctgggtttgagcatccgtccgaagtgcaacacgagtgtatccctcaa
gctatcttgggcatggatgttatctgccaagcaaaatctggaatgggaaaaactgctgtt
tttgttctgtctacactgcagcaaattgagccggttgccggtcaagttgctgcacttgtt
ctgtgtcacacaagagaactggcttatcagatctgccacgagtttgagaggtttagcaca
tacttacctgacattaaagttgcagtcttttatggcggcgtcaacattaaaatccacaag
gaccttctgaagaatgagtgccctcatatcgttgttggtacacctggtcgggtgcttgca
cttgcaagagacaaggaactagcactgaggaatgtgaggcacttcattcttgatgaatgt
gataagatgcttgagtcgcttgacatgagaagagacgttcaggaaattttcaaaatgact
ccccatgacaaacaagttatgatgttttctgcaacattgagcaaggaaatccggcctgtc
tgcaagaaatttatgcaagatccaatggaaatttatgtggatgatgaagccaaactgacc
ctacatggtcttgtacagcattacatcaaactgagtgagctggagaaaaatcggaagctg
aatgatcttctagatgccctggacttcaaccaagttgttatatttgtcaaaagtgttagc
agggcagctgagctgaacaaattacttgttgaatgcaattttccatcgatctgtatccac
tctggcatgtcacaagaagaaaggttaacaagatacaagaattttaaagaggggcataaa
aggattctcgtggcaactgatttggtgggtaggggcattgacatagaacgggtcaacatt
gtcattaactatgacatgccagattctgcagatacatatcttcacagggttggtcgtgcg
ggtagatttggaactaaagggcttgcaatcacttttgtagcttctgcctccgactctgat
gtgcttaatcaggttcaggagaggtttgaggtggatataaaggggcttcctgagcagatt
gatacttctacatatatgccttcataa
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