Daucus carota (carrot): 108209532
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Entry
108209532 CDS
T05350
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108209532
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108209532
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
108209532
NCBI-ProteinID:
XP_017235978
LinkDB
All DBs
Position
2:53489393..53503735
Genome browser
AA seq
1248 aa
AA seq
DB search
MFSLDSGHTQIHNTGELVAMETEVEVFSEGEFQRQLREMICKGSLDFDAWTAVITHIEKY
YLDDIDTISLVYDSFLSKFPLCHVYWKKYVDHKTRLCSVDKAVETFEQAVQSATYCVSLW
VDYCTFSIAAYEDPSDIRRLFKRGLSFVGKDYLCHTLWDKYIEFECSQNQWSSLIRILIQ
SLRFPTKKLHNYYDNFKKFAAILDEERESMNISSMEVKAEILPCGTIDMSESDIDNIIKN
MQDPSNNSGCTKALQNYLATGEQFYHKACQLEKKIHHFEASIGRPFFHMKPLDDNHLASW
HSYLDFVEKQGDFDWTLKIYEKCLIPCANYPEFWMRYVEFMESKGGRELSKFALERATQV
FLEKAPVIHIFNARFREHIGDVHGARAAFLQGDKDSNSYFVESVIKAANMEKRLGNLAAA
SSIYENALYMAAERQKLHTVPLLYIHYSRLKHLIAANADKAIDVMLDGIGHVPHCRLLLE
ELLKLLMMHEGSKYMTVVDSIIANTITSRPDISQSLSTKDKEELSCLYLEYVDLCGTNDD
VRKASKRHLKLFPHLIRTTTSNNNPNATHQLLHMAIEARKMKTFYQLPKSNGPGHLIQIP
VEEQELSTPESNGFVPDLVVAEKVPKGDGNGAQEEHLSLGNELLSIEDVAEVISKQNFVH
QSDHDFIGAMESTQDLTCNPKIDESELLNFTNGSAKQSEQATSRSEELIPEVEQSKVTNI
PSEFLQQCSSSSDIHEMEANELENHPKPVHIMEKASPSSWEKESHDITTMELQDHGVAQR
SSISDGQILEIGRLEEIHVTSNAKGSPPTNPSSIKNNVQNNDPVNLLSSTSHQSLIRRQT
ECEVPANSGENSPQISISKASGGTSPEYHEHLNGVRQHDDLHEQCSTDKMAHISALDVNQ
GGHQYPSGAAPGNVTGHARPVKNVENPSHVSAPLSESSPQHVVSHPQALITQTSELHGPI
QDSQECNQMLQYQLQQQQQQQQQQQQQQQMLLHQQYQNQMIQLQNQYFQLQQQNKQLYQH
QLPLPQQQNQPLPQIQHQHYIQQTQQLQQPSYQLEQQQYLFYQQQQQQVLHQQQMLQQLH
PGQQEQCTQLSGQEHQTQLQHHNYQSEENVRQHNEQYQLQWQQYLVQQQAYQQYLQQQNL
QQQQAYQQLLLQNQAQLQQSIASTGTGNYLQGQGPIPQCDTDAAGLSEDHTQTSPEGMEE
PQNAVNCRPDFSLRPRRHNQSSHRASRTVNTPLSPTLSDQSPLSRSKS
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgttctctctggacagtggacacacacaaatacacaatacaggggagttggttgccatg
gaaacagaagtggaggttttttcggaaggtgaatttcagagacaactccgagaaatgata
tgtaaaggttcattggattttgatgcctggactgcagttataacacacattgaaaagtac
tatctggatgatatagatacaatctctctagtttatgactcctttttgtccaagttccct
ttgtgccatgtatattggaagaagtatgttgatcacaagacacgtctatgctcagttgac
aaggctgttgaaacatttgaacaggcagtgcaatcagcaacatactgcgttagtttgtgg
gttgattattgtaccttcagcatagctgcatatgaggatccatctgacattcgtagatta
tttaagagaggcttgtcctttgttggaaaggattacttatgtcacaccctgtgggataaa
tacattgaatttgaatgttctcagaaccagtggagttctcttataagaattctgattcaa
agtttgaggtttccaacgaaaaagctgcacaattattatgataattttaaaaagtttgct
gcaatactggacgaggagagggagtccatgaacattagcagcatggaagtaaaagccgaa
attctcccctgtggcacaatcgacatgtccgaaagtgatatcgataacatcattaaaaac
atgcaagatccgtcaaataactctgggtgcaccaaagctctgcagaattatcttgccaca
ggagagcagttttatcacaaagcatgccagttggagaagaaaatacatcacttcgaggct
tctataggaaggccctttttccatatgaagcccctcgatgacaaccatcttgcaagttgg
catagctatttggattttgtcgagaaacaaggagactttgattggactctgaaaatttac
gagaagtgcttgattccgtgtgcaaattaccctgaattctggatgcgttacgttgaattt
atggaaagcaagggaggacgtgaactatcgaaatttgccctagaacgagcaactcaagta
tttttggagaaagcaccagtcatccatatttttaatgcaaggttcagggagcatattggg
gatgtacatggtgcacgtgctgcctttctccaaggtgataaagattcaaattcctatttt
gttgaaagtgtcataaaggcagcgaatatggaaaaacgactgggaaatttggcagctgct
tccagtatttatgagaatgcactatatatggcagctgagaggcagaaattgcatactgtc
ccacttctctatattcactattctcgtcttaaacacctgattgctgcaaatgcagacaag
gctattgatgtgatgctggatggtattgggcatgtgccccattgcagattacttctagag
gaactattaaaacttttaatgatgcatgaagggtcaaaatacatgactgtggtggactcc
attatagccaacacaataacaagcaggccagatatctctcaaagtttaagcactaaagat
aaggaagaactatcatgcttgtatttggagtatgttgatctttgcggaaccaatgatgat
gtaaggaaggcgtcgaagcgtcatttaaagttgtttccacacttaatacgaacaactacc
tctaataataatcccaatgcaacacatcagttgttacacatggccatagaagctagaaaa
atgaagactttttatcagctacccaaaagtaatggtccaggccatctgatccagatccct
gtagaagaacaagaactttcaacaccagaaagtaatggtttcgttcctgacctggttgtg
gcagaaaaagtgccaaaaggagatggcaatggtgcacaggaggagcacttatcccttgga
aatgagttgctctctatagaagatgtagctgaagtcatatcaaagcaaaacttcgtgcat
caatctgaccatgatttcattggagcaatggaatcaactcaggatttgacatgcaatcct
aaaatagatgaatctgaattacttaattttaccaatggttcagcaaagcaatctgaacaa
gccacatccagatcagaagagttgattccggaagtagaacagtccaaagtaacaaacata
ccatcagaattcttgcaacaatgctctagttcttcagatattcatgagatggaagctaat
gagctagaaaatcatccaaagccagttcatattatggagaaggcttccccaagttcctgg
gagaaggaatctcatgatattacaaccatggaactccaggatcatggtgtagcccagaga
agttcaatttctgatggacaaatattagagattggccgtttagaagagattcatgttaca
tctaacgcaaaaggctctccacctactaatccatctagtataaaaaacaatgttcagaat
aatgaccctgtaaacctcttatcttcaacaagtcaccagagtcttatccggagacaaaca
gaatgtgaggtgcctgcaaacagtggagaaaacagtcctcagatttctattagtaaggcg
tctggtggtacaagtcctgaatatcacgaacatttaaatggtgtacgacagcatgatgat
ctccatgaacagtgctcaactgacaaaatggctcatatttcagcacttgatgttaaccaa
ggtggtcatcagtatccctcaggtgctgctccaggaaatgtaactggtcatgccaggcca
gtaaaaaatgtagagaacccaagccatgtatctgctccgctttctgaatcatcgcctcag
catgttgtttcccaccctcaagcattaattacccaaactagtgaattgcacgggcctatt
caggacagccaagaatgcaatcagatgttgcaatatcagttacagcagcagcagcagcaa
caacaacaacaacaacaacaacaacaaatgcttctgcatcaacagtatcaaaaccagatg
atacaattacagaaccaatactttcagctgcaacagcaaaataaacaactctatcagcat
cagctacctctgccacagcaacaaaatcagccactgccacagatccaacaccagcactat
attcaacagacacagcagctgcaacagccatcttatcaactagagcaacaacagtatcta
ttctaccaacagcagcagcaacaagtgctgcatcaacaacaaatgctgcagcaactacac
cctggtcagcaggagcagtgcactcaattgtcaggacaagaacatcagactcagttgcag
catcataactatcagtctgaggagaatgtccgtcagcacaatgaacaatatcaactacag
tggcagcagtacctggtgcaacaacaagcatatcaacaatatctacagcagcagaaccta
caacagcaacaagcatatcagcaacttctgctgcaaaaccaagcacagttgcagcagtct
attgcttcaacaggcacaggcaactatctacagggccaagggcctatcccgcaatgtgat
acagatgcagctggactttctgaagatcatacacaaacctccccagagggcatggaagaa
ccacaaaatgcagttaactgcaggcctgatttctctctgcgtccacgacgccacaaccaa
tcctcacacagggcttcacgaacggtcaacacacctctctcgcccactttaagtgatcag
tcccctctcagtcgatcgaaaagttag
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integrated database retrieval system
