Daucus carota (carrot): 108209567
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Entry
108209567 CDS
T05350
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108209567
09123 Folding, sorting and degradation
03018 RNA degradation
108209567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209567
03041 Spliceosome [BR:
dcr03041
]
108209567
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108209567
mRNA degradation factors
5'-3' decay
Lsm complex
108209567
Spliceosome [BR:
dcr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108209567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
108209567
NCBI-ProteinID:
XP_017236035
UniProt:
A0AAF0W6B1
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Position
1:38690159..38694122
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AA seq
149 aa
AA seq
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MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKSRADRKPPGAGGRGRGRGREDGTGGRGAKGMGRGMDD
GLARGSTGGRGRGGPGGRTGGSRGGGRGR
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctctttctctgctaaagaccgctcaaggtcaccccatgttggtggaacttaag
aatggagaaacctacaatggacatttggtaaactgtgatacttggatgaacatccatctg
cgagaagttatatgtacctccaaggatggagataaattttggagaatgcctgaatgctac
atcagaggcaatacaataaaatatcttagagttccagacgaggtgattgataaggttcag
gaagagaaaagccgtgctgacaggaaaccacctggtgctgggggtcgtggaagaggaaga
ggtagagaggatggtactggtgggcgtggagccaaaggcatgggccgtggcatggatgat
ggacttgcaagaggctcaactggaggaagaggcagaggaggtcctggtggaagaacaggg
ggaagcagaggtggaggtcgaggtcggtag
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