KEGG   Daucus carota (carrot): 108209567
Entry
108209567         CDS       T05350                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03018  RNA degradation
dcr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108209567
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108209567
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dcr03019]
    108209567
   03041 Spliceosome [BR:dcr03041]
    108209567
Messenger RNA biogenesis [BR:dcr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108209567
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108209567
Spliceosome [BR:dcr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108209567
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 108209567
NCBI-ProteinID: XP_017236035
UniProt: A0AAF0W6B1
LinkDB
Position
1:38690159..38694122
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKSRADRKPPGAGGRGRGRGREDGTGGRGAKGMGRGMDD
GLARGSTGGRGRGGPGGRTGGSRGGGRGR
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctgcctctttctctgctaaagaccgctcaaggtcaccccatgttggtggaacttaag
aatggagaaacctacaatggacatttggtaaactgtgatacttggatgaacatccatctg
cgagaagttatatgtacctccaaggatggagataaattttggagaatgcctgaatgctac
atcagaggcaatacaataaaatatcttagagttccagacgaggtgattgataaggttcag
gaagagaaaagccgtgctgacaggaaaccacctggtgctgggggtcgtggaagaggaaga
ggtagagaggatggtactggtgggcgtggagccaaaggcatgggccgtggcatggatgat
ggacttgcaagaggctcaactggaggaagaggcagaggaggtcctggtggaagaacaggg
ggaagcagaggtggaggtcgaggtcggtag

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