Daucus carota (carrot): 108209627
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Entry
108209627 CDS
T05350
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 8 isoform X1
KO
K21343
ubiquitin carboxyl-terminal hydrolase 15 [EC:
3.4.19.12
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
dcr01002
]
108209627
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108209627
04121 Ubiquitin system [BR:
dcr04121
]
108209627
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108209627
Peptidases and inhibitors [BR:
dcr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108209627
Membrane trafficking [BR:
dcr04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
108209627
Ubiquitin system [BR:
dcr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108209627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
USP7_C2
DUSP
Caud_tail_N
Motif
Other DBs
NCBI-GeneID:
108209627
NCBI-ProteinID:
XP_017236117
UniProt:
A0AAF1ALM9
LinkDB
All DBs
Position
2:38850708..38865441
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AA seq
872 aa
AA seq
DB search
MEDAAPEHCSHTSQSDDVRVYCVPYRWWKEAEESTPGTVSDWEGGILYTASPTSSGPMKI
INSIFSSDIVFNLRREDNTSQDTQNGEVGISGRDYALIPAEMWLQALKWHSNSKAASKNG
RTFLACEDDMSDIYPLQLRLSTPSEDNILGVRISKKDNAAECFRRACKIFSIQSEILRIW
DFSGQTTQYFLNKEEKGTLYSQLQVEEDILLKLQVYGLSDINGIKKDEMTAQHPNATSPM
MSSVSGKFTSNYIQSRLPTFSGNACEAGSLGLTGLQNLGNTCFMNSALQCLGHTPKLVDY
FLGDYRREINYVNPLGMNGEIASAFGELLKQLWAPGATPVAPRAFKSKLAHFAPQFSGFN
QHDSQELLAFLLDGLHEDVNRVKKKPYAELKDSDGRPDEEVADEYWKNHLARNDSIIVDL
CQGQYRSTLVCPHCRKSSITFDPFMYVSLPLPSTSIRTMTVTVMTTDGNSQQSSVTITVP
KSGRLEDLNQALGSSCSIGVNETLLVVEVYNNKIIRYLEDPSDSLSLIRDEDRLVAYRLP
KDFGKLPLVVFMHQQMEEKNFLGKKTTSWKAFGIPLLASCNIANGSDIRALYLKLVDPYL
DPADNMIDNYDNVVSASNEGTAKLEDSIFLESGEGADTADKNSLDMHTDTDFNFYRADDK
GTGRGSEIEMNEQITCTNFPCRLNVIVCWTEKMVERRNSVLLSSLPETYKSGFFSRKPQE
SVSLYTCLEAFLKEEPLGPEDMWYCPVCKKHCQASKKLDLWRLPEILIIHLKRFSYNRFL
KNKLETYVDFPVHDLDLSPYISFKNGDSSNCYMLYAISNHYGSMGGGHYTAFIHHGGDRW
FDFDDSHVSPISVDKIKSSAAYLLFYRRVQDV
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgctgctcccgaacattgttcccacacttctcaatccgatgatgttcgagtc
tattgcgttccctacaggtggtggaaggaagctgaagaatctacgccgggaactgtatca
gattgggagggagggatattatatactgcatcaccgacctcgtcagggccgatgaaaatc
atcaacagcatattcagttcagatatcgtttttaatctcaggagagaggataatacttcg
caggatactcagaatggtgaggtcggaatttcaggccgcgactatgcactaatacccgca
gagatgtggttgcaggcgctcaaatggcacagcaactctaaagctgcatcaaagaatggc
agaacctttttggcttgtgaagatgatatgagtgatatctatcctttacaacttaggctt
tctactccaagtgaagacaatatattgggcgtaagaataagcaagaaggataatgcagca
gagtgttttagaagggcctgcaagattttcagtattcagtcggagattttacgtatttgg
gatttttctgggcaaacaactcaatactttttgaacaaagaagaaaaaggaactctatac
tcccaactgcaggtggaggaggatattcttttaaagctgcaagtttatggtttatcagat
attaacggaataaaaaaggatgagatgacagcacaacatcctaatgcaacttcacctatg
atgagcagtgtttctggaaagttcacctcaaattatatccaaagtagattgccaactttt
agtggaaacgcttgtgaggctggttctttgggcttgaccggattacagaatttagggaac
acttgctttatgaatagtgcacttcagtgcttgggacacacaccaaagcttgttgactac
tttcttggagattacaggcgggaaataaattatgtgaatccactgggcatgaatggtgaa
attgcttccgcttttggagagttgctgaagcagttatgggctcccggagcaaccccagtg
gcaccaagagcatttaagtcgaagcttgctcattttgctccccagtttagtggttttaat
cagcatgattctcaagaactccttgcttttttattagatggacttcatgaagatgtaaat
cgcgtgaaaaaaaaaccatatgctgaactcaaagattcagatggtcgaccagatgaagaa
gtagcagacgaatactggaagaatcatttggctcggaatgactctattattgtcgattta
tgccaagggcagtatagatcgacactagtgtgtcctcattgtcggaagtcttcgatcacg
tttgatccatttatgtatgtttcgttgccgttaccttcaacatcaatacgaacaatgaca
gtgacagttatgactacagatggaaattctcagcagtcttccgtaactatcactgttcct
aagagtgggagattggaagatcttaatcaggccctaggaagttcatgttcaataggagtt
aatgaaacccttttggtggtggaggtttacaacaataagattattcgttatttagaggat
ccttctgattctttatctttaattagagatgaggatcgattagttgcttatcgattacca
aaagattttgggaaattgcctctcgtggtgtttatgcatcagcagatggaagagaagaat
tttcttggcaagaagacaacaagttggaaagcatttggaattccccttttagcaagttgt
aacattgcaaatggatctgatatccgtgctttgtatttgaagttggttgatccatatttg
gatcctgcagataatatgatagacaactatgataatgttgtgagcgcttcaaatgaagga
actgctaaattagaagattctatctttttagaatctggtgagggtgcagataccgctgac
aagaattccttggacatgcatacagacacagatttcaacttttacagggcagatgacaaa
ggaacaggcaggggttccgagattgaaatgaatgagcagataacatgtacaaatttcccg
tgtagactaaatgttattgtgtgctggactgagaaaatggttgaacgtcgcaatagtgtc
cttcttagttcattaccagaaacctacaaatctggtttcttttcaaggaaaccacaggag
tctgtctctttgtatacatgtctcgaggcattcctcaaggaagagccccttgggcctgaa
gacatgtggtactgtcctgtgtgcaagaagcattgtcaagccagcaaaaaattagatctg
tggagattgcctgaaatcctcatcattcatttaaagaggttctcatacaacaggttctta
aagaacaaattggagacttatgttgactttccagtccacgatcttgatctgtcgccatac
atttccttcaagaatggtgattcttctaactgttatatgctttatgcaataagtaaccat
tatggtagcatgggaggtggtcactatacagcattcattcatcatggtggcgaccggtgg
ttcgacttcgatgacagccacgtttctcctattagtgtggacaagattaaatcttcggcg
gcttatcttcttttctacagaagagttcaagatgtctaa
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