Daucus carota (carrot): 108209628
Help
Entry
108209628 CDS
T05350
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108209628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108209628
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209628
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108209628
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108209628
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_12
DUF4836
Motif
Other DBs
NCBI-GeneID:
108209628
NCBI-ProteinID:
XP_017236120
UniProt:
A0AAF0WJR3
LinkDB
All DBs
Position
2:complement(52965592..52975244)
Genome browser
AA seq
698 aa
AA seq
DB search
MDDAEGGLSFDFEGGLDSGPTQPTASVPVIHQPDPNSIAVASAAKNSNNIVPQSDVSDQQ
APGNFSGRRSYRQTVCRHWLRSLCMKGEACGFLHQYDKTRMPICRFFRLYGECREQDCVY
KHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLKKIQQLTSYSYNNSNRFY
QNHNPNNTQHTERPHVPPGANGVHQVMKSTPTESINVQQHQQQQQQIQQTQQPAVQTQTQ
NLPNGQQNQASRSAIPLPQGISRYFIVKSCNLENFELSVQQGVWATQRSNEAKLNEAFDS
VENVILIFSVNRTRHFQGCAKMTSKICGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSF
HKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMEISVAAELKREEEK
AKGVDPVDGTENLDIVPFEDNEEEEEEESDEEDQGFSQGIAMSAQGRGRGRGMMWPPHMP
VARGGRPMPGVRGFPPVMMGPDGFPYGPLGPDGFPVPDLFNMGPRGFGPYGPRFSGDFAG
PGGMMFRGRPFPPGSFPGGGFGMMGPGRTPFMGGGSGGRPSGVHPMYPPAQLQPSLTTNK
GKRDQKATVNDRSDRYSAGCDQGKGVELLNSGGGQDDEVQYQHRMNPQQEDHNGAGNSYK
HDDSASEDEAPRRSRHGEGRKKRRSTERDETTASGNQE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggacgatgcagaaggaggtttaagcttcgatttcgaaggcggcctcgactcgggtccg
acccaaccgaccgcatccgtacccgtgatccaccaacccgacccgaattcaatcgccgtc
gcctccgctgctaaaaattccaacaatatcgtcccgcagtcggatgtttccgatcagcag
gcgccggggaacttttccggccggcggagttaccggcagacggtgtgtcggcattggctt
cggagtttgtgtatgaaaggagaggcctgtgggttcttgcaccagtatgataagactcgg
atgccgatttgtaggttttttcgactttacggagagtgtcgtgagcaggattgtgtgtat
aagcacaccaatgaggatattaaagagtgtaatatgtataagttgggattttgtccaaat
ggtcctgactgccggtataggcatgcaaagctccctggaccccctccaccggtggaagaa
gtgcttaaaaaaatacagcagctgacgtcatacagttacaataactcaaataggttttat
cagaaccataaccctaataatactcaacacactgaaagacctcatgttccacctggtgct
aatggtgtccatcaagtaatgaaatcaacaccaacagaatcaatcaatgtgcagcagcat
cagcagcaacaacaacaaatccaacaaacacaacaaccagctgtccagactcaaactcag
aatcttcctaatggccagcaaaatcaagctagtagatctgcgattcccctacctcaagga
atatctaggtattttattgtcaaaagttgcaatctggagaattttgaattgtcagttcaa
caaggagtttgggctacacaaaggagcaatgaagctaaactcaatgaagcttttgactcg
gttgaaaatgtgattttaatattttcagtaaacaggactcgacattttcagggctgtgca
aagatgacgtctaaaatatgtgggtctgttggaggtggaaactggaagtacgcccacgga
acagcccattatggaaggaatttctcagtcaagtggttaaagctttgcgaactatccttt
cataaaactcgccatttgaggaatccatacaatgaaaacttaccggtcaagatcagcaga
gactgccaagagctggaaccctcagttggcgagcagttggcttccctgctatatcttgag
ccagacagtgaactgatggaaatttcagttgctgcagaattaaagcgcgaggaggagaag
gccaagggagttgatccggtggacgggactgaaaatctagatattgttccattcgaggac
aatgaagaggaggaagaggaagaaagtgatgaagaggatcagggctttagccaaggtatt
gcgatgtcagctcaaggaagaggtagggggaggggaatgatgtggcctcctcacatgcct
gtagcacgaggtggcaggccaatgcctggagtgcgtggctttccccctgttatgatgggt
cctgatggatttccttatggcccattgggacctgatggttttcccgtgccagatcttttt
aatatggggcctcgtggttttggtccatatggccctagattctctggtgattttgctgga
cctggaggcatgatgtttcgaggtcgaccttttccgcctggaagctttcctggcggtggc
tttgggatgatgggccccggaagaactcctttcatgggaggtggttctggaggtcgtcct
agtggtgtgcacccaatgtatccgccagctcaattacagccttctctgaccacaaacaag
ggtaagagggatcagaaggcaacagtaaatgataggagtgacagatatagtgcagggtgt
gatcaaggcaagggcgtagaattgttaaactcaggtggtgggcaggatgatgaggtacag
tatcagcatagaatgaatccccaacaagaagatcataacggtgctggaaacagctacaaa
catgatgatagtgctagtgaggatgaggcacctaggaggtcaagacatggggaaggaagg
aagaagagacgaagcactgaacgagacgagaccacagcttccggaaaccaggagtaa
DBGET
integrated database retrieval system
