Daucus carota (carrot): 108209645
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Entry
108209645 CDS
T05350
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108209645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108209645
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108209645
Spliceosome [BR:
dcr03041
]
Complex C
Other components
Step II factors
108209645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
ATPase
T2SSE
AAA_16
ABC_tran
AAA_30
AAA_29
Motif
Other DBs
NCBI-GeneID:
108209645
NCBI-ProteinID:
XP_017236149
LinkDB
All DBs
Position
2:47663761..47672881
Genome browser
AA seq
705 aa
AA seq
DB search
MVAIAAASSMVDNTPLQKRQKILQQRKSLPIATVEKRLLEEVRKNDTLIIVGETGSGKTT
QLPQFLYNGGFCRDGGLIGITQPRRVAAVTVAKRVAEECGSQVGQRVGYAIRFEDVTSNM
TKIKYMTDGLLLREALLDPYLSRYAVIIIDEAHERTVHTDVLLGLLKRVQKTRSQYANKQ
SNVDLMKANFNTLIKREENGPGVGNLQQCQRRNSNPLKLIIMSASLDARGFSEFFDNAKA
VHVQGRQFPVDIYYTFQPQTDCVDAALLTIFQIHLEEGPGDILVFLTGQEEIESVERLVR
NRIRQLPEGSQNLSTFPIFSSLPSEKQLKVFAPAPPGFRKVILATNIAETSVTIPGIKYV
IDPGLVKVRSYSSESGIDSLITVETSKSQAHQRSGRAGREGPGKCFRLYQESLFDKLPDS
TVPEIKRLDLSNVILQLKALGIDDIFGFDFMEKPDEKAVIRSLETLFLLGALTDEAKLSN
PVGQQMARLPLDPMDSRAILLASQFNCLKEMLIAVAMLSVESIFYAPPDKLEQSRAAMRC
FSSPEGDHLTLINVYCTADEFFEKSLASNSKEKAEKNLRNWCKENFINSRSLKHARDIHS
QILDNVTRMGLRVTSCGDDMLQFRRCLAASFFLNAALKQPDGIYRVYRSGQMAQIHPSSV
LFRSKPECIIFKELVQTTQSYVRNVTRIDPLWLSELAPQYFGVQE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggttgctattgccgctgcctcctcaatggtcgataatacccctcttcagaagaggcaa
aagattttgcaacagagaaaatctttacctattgctacagttgaaaagaggcttttggag
gaggttaggaaaaatgatacattgattattgttggtgaaactggaagcggaaaaactact
cagttaccacagtttctttacaatgggggattttgccgtgatggtggattaattgggatc
actcaacctagacgtgttgctgcagtgactgttgctaaaagggtagctgaggaatgtggc
agtcaggttggccagcgagttggttatgccattagatttgaggatgtcacctccaacatg
actaagatcaaatatatgaccgatggactactgttaagggaagcactactggacccttat
ctctccaggtatgcagttataatcatagatgaggctcatgagagaactgttcatactgat
gtcctgctcgggttgctcaagagagtacaaaagactaggtcacaatatgccaacaagcag
tcaaatgttgacttgatgaaggccaattttaacacactcataaagagagaagaaaatggc
ccaggcgttggtaatctccagcagtgccaaaggaggaattctaatccattgaagttgatt
atcatgtctgctagtttggatgcacggggcttttctgagttctttgataatgcaaaagct
gtccatgttcaagggcgacaatttcctgtggatatatattatacttttcagccccagaca
gattgtgtagatgcagctttactaactatatttcagatacatctggaggagggtcctggg
gacatacttgtcttcttgacgggccaagaagagattgaatctgttgagaggcttgttcgc
aaccgcattcggcagttaccagaaggcagccaaaatctatctacttttcctattttttca
tctcttccctcagagaagcagttgaaagtgttcgcgcctgctccgcctggatttcgcaag
gtgatactggcaactaatatagctgagacctcagtgacaatacctggaatcaagtatgtt
attgaccctggtttggtgaaggtgcgaagttactcttccgaatctgggatagattccttg
ataacagttgaaacttcaaaatcccaggctcaccagaggagtgggcgtgctggacgtgaa
ggaccaggaaaatgctttcgtctttatcaagagagtttatttgacaagcttcccgattca
acagtaccagagatcaagaggctggacttgtcaaatgttatattgcagcttaaagctcta
ggcattgacgacatttttggatttgacttcatggaaaaaccagacgaaaaagctgtcata
agatcattggaaacattgttcttgctaggcgctttaacagatgaagcaaaactatcgaat
ccagttgggcaacagatggcccggcttccattggatcctatggattcaagggcaatcctc
cttgctagtcagttcaattgcttaaaagagatgttaatagctgttgctatgctttccgtg
gagtccatcttttatgcaccccctgataagcttgaacagtcacgtgcagcaatgagatgc
ttttcaagtccagagggagaccatctgactttaattaatgtctactgcactgctgacgag
ttcttcgaaaaaagcctggcaagtaatagtaaagaaaaagctgaaaagaatttgagaaat
tggtgcaaggaaaattttatcaatagccgctctctgaagcatgctcgtgacattcacagt
caaatcctcgataatgtaactcgtatgggtcttcgtgtcacttcatgcggggatgacatg
cttcagttccgcagatgtcttgctgcatcctttttcttaaatgctgctctgaagcagcct
gatggcatttacagggtttatcgaagtggccagatggcacaaatccacccatcttctgtg
ttgttcaggagtaaaccggagtgcataatattcaaagaattagtccaaactactcaaagc
tatgttcggaatgtcaccaggatagaccctctgtggttatcggagctggctcctcagtat
tttggggttcaagaatag
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