KEGG   Daucus carota (carrot): 108209673
Entry
108209673         CDS       T05350                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    108209673
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dcr04121]
    108209673
   03036 Chromosome and associated proteins [BR:dcr03036]
    108209673
Enzymes [BR:dcr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108209673
Ubiquitin system [BR:dcr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    108209673
Chromosome and associated proteins [BR:dcr03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     108209673
    Noncanonical PRC1 (PRC1.1)
     108209673
    Noncanonical PRC1 (PRC1.3/1.5)
     108209673
    Noncanonical PRC1 (PRC1.6)
     108209673
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_5 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-UDP zf-rbx1 zf-RING_6 RA_2 TRAF3_RING zf-RING_10 DUF3337 zf-RING_11 zf-Nse
Other DBs
NCBI-GeneID: 108209673
NCBI-ProteinID: XP_017236202
LinkDB
Position
2:complement(54281495..54291187)
AA seq 402 aa
MPAQKRSVNSPAGSDDDNTNQNNNNSSVQRNQNSDEQPQEEQSDSNGSRSSSPAGDDEEY
IIVHLPDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR
RSLRDDPKYDALISALYPDIDKYEEEELAFHEEERTRYKQIQDSIAQTQRRQSEALGKKR
SSARATAAAFVRRSQVYRNSRGRRIQREQEASDEENYANGRDRVPGSADRGDENDAEVNR
DSLGASAGLVVNSEMLAWGRGGMRSNTRHSNQSAGNIKIARSNRLSKLLESLQDTVEEDA
LKIHLILMPLDEQRLPSLQQPHMRCEPTATVRKLCQYVASYTAAEVHEIEIFLVQQSNKD
VLRILEGHETLAELRAMYSITQHDMRFAYRQKLPASMNSVRT
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgcctgcacagaagcgttctgtgaacagtcctgctggctctgacgatgataatacaaac
caaaacaacaacaattcttccgtacagcgtaaccagaacagcgatgagcagcctcaagaa
gagcaatcagattcaaacggaagccgttcttcgagtcccgctggcgacgatgaagaatat
attattgttcatttgcctgatatacgcaaggaagtacaatgtccaatttgtctagggatt
ataaggaagacaagaacggttatggaatgtttgcatcgcttttgcagggaatgcatcgac
aaatcaatgagactgggaaacaatgagtgccctgcatgccgtacgcattgtgcaagtcgt
cgttctctgagagatgacccaaagtatgatgcactcatttctgctctttatccggacatt
gacaagtatgaagaggaggaactagcttttcatgaagaggagaggactcgctataagcag
atccaagattcaattgcccagactcagcgccgacaatctgaggcactaggcaagaaacgc
tcaagtgctagagcaacagctgctgcattcgtgaggagatcacaggtgtatcgcaattcc
agaggaaggaggatccaaagggagcaggaggcatctgatgaggagaattatgctaatggc
cgtgatagagtgccagggagtgcagatagaggagatgaaaatgatgctgaagttaacaga
gattccttgggcgcatccgctggacttgttgtaaactctgaaatgcttgcttggggtaga
gggggcatgcggagcaacactcgccacagcaatcagagtgctgggaatataaagattgca
aggagcaaccgcttgtctaagctgcttgaaagtctccaagatacagtggaagaagatgcg
ttgaaaatacatctcattctcatgcccttggacgaacaaagactaccaagtttgcagcaa
ccacacatgcgttgtgaacccactgcaacggttagaaaactatgccagtatgttgcttcg
tacactgctgctgaagttcatgaaattgaaatttttctggtgcaacaaagcaacaaagat
gtattgcgtatcctggaggggcatgaaactttggcagaacttcgagctatgtatagcatt
actcagcatgatatgcgttttgcatacaggcagaagttaccagcttcaatgaattccgtt
cgaacttga

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