Daucus carota (carrot): 108209695
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Entry
108209695 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108209695 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108209695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108209695
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209695
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108209695
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108209695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
108209695
NCBI-ProteinID:
XP_017236233
LinkDB
All DBs
Position
2:complement(43054649..43061402)
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AA seq
563 aa
AA seq
DB search
MRPVFNPRPNKQVMESNNKFQTNPTSLLPQMGLISPSNLNNNNFLNLPNNQFFPNGMLPL
GQFPNGFVPQNFNMGMNQFNLPQLNGQILPQNLMNQGGGISFPNGQFFVQTPMQNMGQFV
QMPMGLSAPFLQNQVRGPQNPAFNGNQQFGVLNFNGVSVQSNQQQNAANGNQQLQGNSPV
QPPFGSVQSQQTQNLQPQVFNNQQGNPRNDSVINNVANNGRNSQSRNFGRHPRQDRSPGF
GKSQNHHVQNGKGKFKNGRGAKSDLSCLNSTSRPIYKLQFPTLESYQNERKFGLPDPSNG
TQVEKKKFLPLNYTEQEIKQWREARKRHYPSKSNIEKKSKKKMAESELADTEAKLRRQQL
KEVLVKQAELGCEVAEIPSHYLSDSEKQVYGAEQNRAAFNKKGKFRNRPNRRGKRENDRF
AKKQRLSNTDSTSTNEQNVSKQMQRTRNNNTSVVQKREPSLLQKLLSADIRRDRGRLLQV
FRFMVMNSFFKYQPEKPLMFPTVIVRETEGEGKPLEQKHSHDEDDEEEGSESQVNEMEIV
RNAECEVNEASAEAQEEEGEIVD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccggtcttcaatcctcgacctaataagcaggtcatggaatctaataacaagttt
cagacaaaccccactagtttattgcctcaaatgggtttaatcagcccttcaaatttgaac
aacaataatttcttgaatcttcctaataatcagtttttcccgaatggtatgttaccttta
ggccagtttccgaatgggtttgttcctcaaaattttaacatgggtatgaatcagtttaat
ttgcctcagttaaatggccagattttaccccaaaatttgatgaaccagggtgggggtatt
agttttccaaatgggcagttttttgtgcagactccgatgcaaaatatgggtcaatttgtt
caaatgcctatggggttgagtgcaccttttcttcaaaatcaagttaggggtccccagaat
ccagcctttaacggtaatcaacagtttggggtgttgaattttaatggagtctcagtgcaa
agtaatcaacagcagaatgcagctaatggtaatcagcagttacaaggcaactcgcctgtg
cagcccccttttggttcggttcaatcccagcaaactcagaatttgcagcctcaggttttt
aataaccaacagggcaatccaagaaacgatagtgtcattaacaatgtggctaacaatggg
agaaattctcaaagcaggaactttggaaggcatccaagacaggatagatcaccaggattt
ggaaagtcccagaaccatcacgtgcaaaatggcaaaggaaaattcaagaatggacgtggg
gcaaaatcagacttgtcatgtcttaatagtacgtctcggccaatttacaagttgcagttc
cctactttagaaagttatcaaaatgaaaggaaatttggtcttcctgatcctagcaatgga
actcaggtggagaagaaaaaatttctgcctctaaactatacggaacaagaaatcaagcag
tggcgtgaagcaaggaaaagacattatccatcaaaaagcaatatagagaagaaatctaag
aaaaagatggcagagtcggagcttgctgatacagaggccaagttaaggcgtcagcaactg
aaagaagttttggttaaacaagcggagttggggtgtgaggtagcagaaataccatcacat
tatctctctgactcagagaaacaggtttacggagcagagcaaaatcgtgcagcatttaac
aagaagggaaagttccgaaacaggcccaatagaagaggaaaacgtgaaaatgacaggttt
gccaagaagcaaagactgtcaaacaccgattctaccagtacgaatgaacaaaacgtctct
aaacaaatgcaaagaacaagaaacaacaatacatcagttgtgcagaagagggaaccgagt
cttctacaaaagctcctaagtgcagatatccggagagacagaggccgcctgttacaggtc
tttaggtttatggtaatgaactcgttctttaaataccagccggagaagcccttgatgttt
ccaaccgtaattgttagagaaaccgaaggcgagggcaaacccttggagcaaaaacattca
catgacgaagatgacgaggaagaaggctctgaatctcaagtgaatgaaatggaaattgtg
aggaatgcagaatgtgaggttaacgaggcttctgcagaagctcaggaagaagagggagaa
atcgttgactag
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