Daucus carota (carrot): 108209897
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Entry
108209897 CDS
T05350
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108209897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209897
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108209897
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108209897
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
108209897
NCBI-ProteinID:
XP_017236588
UniProt:
A0A166E0G3
LinkDB
All DBs
Position
2:44053532..44058943
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AA seq
568 aa
AA seq
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MSGLLNSGLNASSNLPDSGERAYSTAYSAQSGNLLGLHSTHGSYNIPNMSGTYASRNAAA
NGGPSSGVQQTAGSIGNGRFSMNNLPAALSQPSPGSSHALSGITNNGGLSPNLGNGGRLI
NSMGNLVSGANVGRNLSSAAGLNIPGAGSRLNLTAPQMVSLLGNSYSAGGGQLSQNHFQT
GNNHLALLNELSRDHASFDINDFPQLTGQPNSASGSQGQLGLTRKQGVGFLQQNQEFSMQ
NEDFPALPGYKGGGGGSEFQSNMHQKEQLHESVMSMMQSRHLPVGRSSGFNIGGSFPSHH
QQQQQHAQSVTGGGLSFLPGNNQDIQFNSSEVRSAGLPASGSRPSNLSNAISGVGSYDQL
IQQYEHFQKQSQYRSGSTFRDQESKSGPALQGAADRFGLLGLLSVIRMSNPDLTSLALGI
DLMTLGLNLNSSETLNKKFASPWSEEPAKGEPHFSVPDCFNSKQLPLLSQAFFSRFRQET
LFYIFYSMPKEEAQLYAANELYTRGWFYHREFRLWFIRVPKMEPLVKTNTYERGCYFCFD
PNSWETTRKDNFVVQYEMVEKRPVLPRQ
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggcttctcaattcaggtctgaatgcctcctctaatcttccagattctggtgaa
agagcttactcaacagcttattctgctcaatcaggtaatcttttagggctacatagcacc
cacggaagctacaacatacccaatatgtcaggtacatatgcctcaagaaatgctgcagct
aatggtggtccttcaagtggagttcagcaaactgcaggaagtataggaaacggccgattt
tctatgaacaatctccctgctgccctttctcagccatctcctggaagctcacatgcactc
tcaggcataactaataatggaggcttatcgccaaatttaggaaatggaggaagacttatt
aactcaatgggtaaccttgttagtggcgcaaatgttggaaggaatttgagttctgctgct
gggttaaatatacctggtgctggttcgcgcctaaatttaacagctccacagatggtgtct
ctgctaggaaattcttattctgctggtggaggtcaactgtctcaaaatcacttccaaaca
ggcaataatcatctcgcattattaaacgagctaagccgtgaccatgcaagcttcgatata
aatgattttcctcagttaactgggcaacctaattctgcttctggttcacaagggcaatta
ggattgactcgcaaacaaggtgttggatttctccaacagaaccaagagttcagcatgcaa
aatgaagactttcctgctttacccggatataaaggtggtggtggtggtagtgagtttcaa
tctaatatgcaccagaaggaacagctgcatgaaagtgtgatgtcaatgatgcaatcacgc
cacttgcctgtgggaaggtcttctggtttcaacataggaggttcgtttccatctcatcat
cagcaacagcagcaacatgctcaatcagtaacaggtggcggactctcctttttaccagga
aacaaccaggatattcaattcaacagttctgaggtcagaagtgctggcttacctgcaagt
ggttcaaggccttcaaatttgtcgaatgccatatcaggtgtcggatcctatgaccaacta
attcagcagtatgaacacttccagaaacaatcccaataccgatctggcagtacatttaga
gatcaggagtcgaagtctggtccggcattgcaaggcgctgctgatagatttggtttgctt
ggtttgttgagtgtcattaggatgagtaatcctgacttgacctcccttgctttgggaatt
gatctaatgacactaggtctaaatttaaactcttcagagactcttaacaaaaaatttgct
tcgccatggtctgaagaacctgccaagggagagccacattttagtgttccagactgtttt
aattccaagcaactgcctctgctatctcaagcattcttttcaagatttcggcaagaaaca
cttttttatatattttacagcatgccaaaagaagaggcccagctttatgctgctaatgaa
ctttatactagaggatggttttatcacagagaatttcgtttgtggttcatacgggtcccc
aaaatggaaccccttgttaagacgaacacttatgaaagaggttgctacttttgctttgat
ccaaattcttgggagacaactagaaaggataattttgttgttcagtatgaaatggttgag
aaaagacctgtcctcccccgccagtag
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