Daucus carota (carrot): 108210019
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Entry
108210019 CDS
T05350
Name
(RefSeq) multisubstrate pseudouridine synthase 7
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dcr03016
]
108210019
Enzymes [BR:
dcr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
108210019
Transfer RNA biogenesis [BR:
dcr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
108210019
Prokaryotic type
108210019
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
PUS7L_N
S-layer
CDC37_C
Motif
Other DBs
NCBI-GeneID:
108210019
NCBI-ProteinID:
XP_063943733
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All DBs
Position
2:complement(42950611..42962887)
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AA seq
752 aa
AA seq
DB search
MALRGCLVSYPLQLGAKKVILKLKPYTNWALKPSKQPLNINIITTTTSRRSICCGINVEI
CLDYIAETMNFVDEADVGITCFISQLPGFRGILKQRYADFIVNEVDLDGNVVHLTSLVAP
PEIAEEKVVKMADEPNKSYDAEIESFRVLAGDADANCLRAFIDQINSGAEESVAHITLSP
SSDKSHRTAMHNFFKENMKFLVTDTVDGPDTSSKCIRVRLNSSVNAGRGKNSRKRKERNE
KSYDSRGSKNWPENLGKFIKFHLYKENKDTQEALGVIGKMLGIQPRSFGFAGTKDKRAIS
TQRVTLYKVRASRLAALNARLIGIKIGDFCHVEDGLVLGQLYGNKFTITLRGVTADSDDT
IKASADALGRRGFINYFGLQRFGSGSVPTHIIGAALFRGEWKAAVQMILDPREGERENIR
EVREYYKESDDIEGTLRQLPRHLVAERAILQCLKKCPGNYLMALKAIPRTLRMMYVHSYQ
SYLWNHAASTRVQKYGSDQVVLGDLVLCKEDSGKATEEVIFDAELEDNICDDPDDCSHLD
DISNTIAAEVKSAVVKAITQENLLAGDYTVEDVVLPLPGSRVTYPLNDIGKVYHDIAKKD
DVNLKESAHGIKEFSITSMTGAYRRVFQKPQDFKWEMLTYTDGNIPLAETDLDVVNRILV
KEDMDCGREDVKHQNNQKIATVGNDVMVPTNTDEPENNMKAKSHSKESLASSHEEQKAVK
MSFTLPSSCYATMAIRELLKSSTSVAFHKTLN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaaggggctgtttggtgagttacccactacaacttggagctaagaaagttata
cttaaactaaaaccctacacaaattgggcgcttaaaccctccaaacaaccccttaacata
aatataattacaaccactacaagtaggcgtagcatttgttgtggaattaacgttgaaatc
tgtctggattacatagctgaaaccatgaatttcgtcgacgaagccgatgtcggaatcaca
tgtttcatatctcagcttcccggtttccgaggcatcctcaaacaaaggtatgctgatttt
atagtgaatgaagttgatttagatggcaatgttgttcatttaacctctttagtggcacca
cctgagattgcagaggagaaagtagtaaagatggcagatgaaccaaataaaagttatgat
gctgagatcgaatcgttcagagttttagctggtgacgcagatgccaactgtctgagagct
ttcattgatcagattaattctggggctgaagagtctgttgcccacataacgctgtctcca
agttctgataaatctcatcgaacagcaatgcataattttttcaaggagaatatgaagttc
ctggtaactgacactgtggatggaccagatacatcatcaaaatgcatccgtgtaagattg
aattcaagtgttaatgctggcaggggtaaaaactccagaaaaagaaaagagagaaatgag
aagtcgtatgatagcaggggttcaaagaattggccagagaatctcggcaagttcattaag
tttcatctgtacaaggagaacaaggatacacaagaggcgttaggagtgataggaaagatg
cttggcatccagccaaggtcatttggttttgctggtacgaaagataaacgtgctatatca
acacaaagggttactctctacaaggtgcgtgctagtaggttagctgctctaaatgcacga
ctgattggcattaaaattggcgacttctgccatgttgaagatggtcttgttcttggacag
ctgtatggaaataaatttacaataacattgagaggggtgactgcagactctgatgatacc
atcaaagcttcagcagatgccttgggaagacgtggattcatcaactacttcggtttgcaa
cggtttggaagtggttcggtgccaactcatattattggagctgccttgtttcgtggggag
tggaaagccgcagtgcaaatgatccttgatccacgagaaggggaaagggaaaacataaga
gaagtgcgagaatattacaaagaaagtgatgatattgaagggaccttgcgccagttacct
cgccatctggttgcagagagagctatactacaatgtttaaagaagtgtcctgggaactac
ttgatggctttgaaggccatacctaggaccttgagaatgatgtatgtacatagttatcaa
agctacttatggaatcacgcggctagcacaagagtgcagaaatatggaagtgaccaagtt
gtgttgggagatctagtgctttgtaaagaagatagtggaaaagctacagaagaagtaatc
tttgatgctgaattggaggataatatctgtgacgacccagacgattgtagccatctggat
gacatatccaacacaattgcagcagaagttaaaagtgctgtagtgaaggctataactcag
gaaaatttacttgctggtgattacacagttgaagatgttgtacttcccctgcctgggtca
agggtaacatacccattgaatgatatcggcaaagtttatcatgacatagcaaagaaggat
gatgtcaacttgaaagagagcgcacatggtatcaaggaattctcgatcacgagcatgact
ggagcctacagacgagtatttcagaaaccacaggacttcaaatgggaaatgctcacatat
acagatggaaatataccattagcagagacagacttagatgttgttaaccgaatcttggtt
aaagaggatatggactgtggaagggaggatgtgaaacatcaaaataaccaaaaaatagcg
accgttgggaatgatgtcatggtaccgacaaatacagatgagccagaaaataacatgaaa
gcaaaatcacatagcaaagagtctcttgctagctctcatgaagaacagaaggctgtcaaa
atgagctttacactcccatcttcttgctatgcaactatggcaatcagggaattgcttaaa
agttcaacttcggttgcatttcacaaaactttaaactag
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