Daucus carota (carrot): 108210149
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Entry
108210149 CDS
T05350
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108210149
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108210149
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108210149
NCBI-ProteinID:
XP_017236908
UniProt:
A0AAF0WG86
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Position
2:40909695..40913730
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AA seq
509 aa
AA seq
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MSEFFGSLCIYSPLIFSSHATCLNMILLICIVLCFVLLVSCSLSGATVNFTLSHQHSNPE
AVVQEVQRRILASTSNAESHDQQSCTTGNPIDDCWQCDPNWGNNRQRLADCAIGFGQGAS
GGKGGQIYAVTDSSDNDVEDPKPGTLRFGVVQAEPLWIIFAANMQIKLSHELIVSSFKTI
DGRGANVYITGKGCITIQDVSNVIIHNIHVYNCVPSGSADIRLNPGQVEHKGKSDGDGIS
ISGSRNVWVDHCAISHCTDGLVDVTVGSTAVTISNNYFSHHDKVMLLGHSDKYTPDKGMQ
VTIAFNHFGVQLIQRMPRCRHGYFHLVNNDYTEWQMYAIGGSADPTIISQGNRYTAPNDA
SSKQVTKRLDTDEGDWAGWDWRSDGDVMVNGAYFVPSGQGDLYTKDSGAEPRSAAMIDRL
TSAAGVLGGPRDNGDHISHDGGTNSDENGSGGGMTFGSGDGMTFGSAGMEFGSANPPLSP
STAIFLSVIVVATLEMITRNGAVLPLELL
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagttctttggatcattgtgtatatatagtccacttattttttcaagtcatgca
acttgtttaaatatgatccttttgatctgcattgtactctgttttgttcttttagtctct
tgttctctgagtggagctactgttaacttcactctgtctcatcaacattctaaccctgaa
gctgtggtgcaagaagttcaaaggagaatactagcctcaacttccaatgcagagtcacat
gatcagcaatcctgcactaccggcaatccgattgatgactgctggcaatgtgatccaaat
tgggggaacaaccgccagcgccttgctgactgcgccataggctttgggcagggtgctagt
ggaggcaaagggggtcagatttacgcggtcactgactcctctgacaatgatgtggaggac
ccgaaaccaggcaccctaaggtttggtgtggtccaggctgagcccctttggatcatattc
gcggccaatatgcaaatcaagctctctcatgagctcattgtcagtagcttcaagacgatt
gatggccggggtgctaatgtgtacattactggaaaaggctgcattacaatccaggatgtt
agcaatgttattattcataatattcatgtttacaattgtgttccatccgggagtgctgac
atccggttaaatccaggccaagttgaacataaaggcaagtcggatggcgatgggataagc
atctcggggtctagaaatgtttgggtggatcattgtgctatttcacactgcacagatggt
ttagttgatgtcaccgttggctccacagctgtaacgatttcaaacaattatttctcgcat
catgacaaagtgatgttgctgggacatagcgataagtacacgcctgataagggtatgcag
gtaacaattgcgtttaatcattttggagtgcaattgatacaacggatgcctcggtgtaga
cacggatacttccatcttgtgaacaatgattacactgaatggcagatgtacgcgattggt
ggtagtgctgatccaaccattattagtcagggcaatcgttacactgctccaaatgacgcg
tcctccaagcaggtgactaagaggttggacacggatgagggagattgggcaggatgggac
tggagatcggatggcgatgtaatggtaaatggagcatactttgtcccctcgggtcaaggc
gatctatacaccaaggattctggtgctgagcccaggtctgctgccatgattgaccgcctc
acttccgctgctggagtccttggtggtccaagggacaatggtgaccatatatcacacgat
ggtgggacaaattccgatgaaaatgggagcggtgggggcatgacatttgggagtggcgac
ggcatgacttttgggagcgctggcatggagtttgggagtgctaatccgccactatctcca
agtacagccatttttttgtctgttatagttgttgcaacactggaaatgatcaccagaaat
ggtgctgtattaccactagaactgttatag
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