KEGG   Daucus carota (carrot): 108210277
Entry
108210277         CDS       T05350                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
dcr  Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dcr03041]
    108210277
Spliceosome [BR:dcr03041]
 Complex B
  Other components
   Complex B specific factors
    108210277
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EML LisH_TPL Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_DCAF4 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_NWD2_C Beta-prop_RIG_2nd Beta-prop_SCAP Ge1_WD40 Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_VPS8 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 DUF7165 VPS8_N Beta-prop_WDR75_2nd PROPPIN Beta-prop_IFT122_2nd Mala_s_1-like Beta-prop_IP5PC_F zf_topless Beta-prop_LRRK2 WD40_like DUF5738
Other DBs
NCBI-GeneID: 108210277
NCBI-ProteinID: XP_017237082
UniProt: A0A169WQ56
LinkDB
Position
2:33785638..33796919
AA seq 513 aa
MSTLEIEARDVIKIVLQFCKENSLHQSFQTLQNECQVSLNTVDSLETFVADINSGRWDAI
LPQVSQLKLPRKKLEDLYEQIVLEMIELREMDTARAILRQTQAMAVMKQEQPERYLRLEH
LLVRTYFDPHEAYQESTKEKRRAQIAQALAAEVSVVPPSRLMALIGQALKWQQHQGLLPP
GTQFDLFRGTAAMKQDVEDMYPTSLGHTIKFGKKSHPECARFSPDGQFLVSCSVDGFIEV
WDHISGKLKKDLQYQAEETFMMHEDAVLCVDFSRDSELLASGSQDGKIKVWRIRTGQCLR
RLERAHSQGVTSVVFSRDGTQLLSTSFDGTARIHGLKSGKLLKEFRGHASYVNDAIFTHD
GLRVVTASSDCTVKVWDLKTTDCLHTFKPPPPLRGGDASVNSVHLFSKSSDHIIVCNKTS
SIYLMTLQGQVVKSFSSGKREGGDFVAACLSPKGDWIYCIGEDRNMYCFSHQSGKLEHLM
KVHEKDVIGITHHPHRNLVATYGEDCTMKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctaccctagaaattgaagctcgcgatgtgattaagatagttcttcagttctgcaag
gaaaattctttgcaccaatctttccagacattacaaaatgagtgtcaggtttctctgaat
acagtagacagccttgaaacatttgttgctgatattaacagtggaaggtgggatgcaatt
ttgccacaagtatcacaacttaagcttccaagaaagaaactagaggatctgtatgagcag
attgttctagaaatgattgaacttcgagaaatggatactgcacgggctattttgaggcaa
acccaggcgatggctgtcatgaaacaggagcaacctgaaagatatttgaggcttgagcat
cttcttgttcgaacttattttgatccccatgaggcttatcaagaatcaacaaaggagaag
cgacgtgcacaaattgctcaagctcttgcagcagaagtttctgtggttcctccatcacgg
ctaatggccttaattggtcaggctctaaagtggcagcagcaccaaggcttgcttccacct
ggaacacagttcgacttgtttcgaggtacagctgccatgaaacaagatgtagaagatatg
taccctaccagtctcgggcatactatcaaatttgggaaaaagagtcacccagaatgtgct
cggttctcaccagatggccagttccttgtttcttgctctgttgatggatttattgaggtc
tgggatcacataagtggaaaactcaagaaggatctccagtatcaggctgaagaaacattc
atgatgcatgaggatgctgtactttgtgttgattttagtagggattcggaattgcttgca
tctggatctcaagatggaaagattaaagtttggcgcattagaactggtcaatgcttgcgt
cgccttgagcgtgcacattcccaaggtgttacaagcgtcgtcttttcacgagatggaact
cagctgctaagcacatcatttgatggaactgcaagaatacatgggctaaagtcagggaag
ctgttaaaagaatttcgtggccatgcatcatatgtaaatgatgccatatttacacatgat
ggacttcgtgttgtaactgcatccagtgactgcacagtcaaggtctgggatttgaagact
acagactgcctgcatacattcaagccaccgcctcctctaagggggggtgatgcatctgtg
aattctgttcatcttttctcgaaaagctcagatcacattattgtctgtaataagacatca
tcaatatacctaatgacactccaggggcaggttgtgaagagcttttcatcgggtaagaga
gaagggggtgattttgtggcagcttgtttatcacctaaaggggattggatatattgtatt
ggtgaagacagaaatatgtattgcttcagccaccaatcaggcaaactagaacatttgatg
aaggtgcatgagaaggatgtaattggtataacacatcacccgcaccgaaatctggttgcc
acctacggagaagattgcacgatgaagctgtggaagccttaa

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