Daucus carota (carrot): 108210556
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Entry
108210556 CDS
T05350
Name
(RefSeq) DNA mismatch repair protein MSH3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108210556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108210556
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108210556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Bul1_C
Motif
Other DBs
NCBI-GeneID:
108210556
NCBI-ProteinID:
XP_017237378
UniProt:
A0AAF0WK09
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Position
3:complement(6797052..6805086)
Genome browser
AA seq
1103 aa
AA seq
DB search
MGKQKQQVISRFFAPNPKTPSNPTPSSPPPPPKISTTVNFSPAKRALNSQFISSTKPPKT
PKLSPHTHNPIPSLHQRFVEKLLEPSQDLLEPSGESSLVGPSVKYTPLEQQVVELKRKYP
DVLLMIEVGYKFRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNVYVRRLVGAGYKV
GVVKQTETAAIKAHGSNRLGPFCRGLSALYTKATLEAAEDVGGGEEGFGSCSNYLVCVVE
NVDIGGIESGCDSKIGIIAVEISTGDVIYGEFDDNFMRSALEALLLRLSPAELLLAEPLS
KQTEKLLSSYAGPTSNVRVEHISRDSFNQGSALAEVMALSDNKSDSQLVKNLHKETEVET
EAADCSTNEGIVDMPDMVVQALALTIRHLKQFGFEKILCSGASFRPLSGSMEMTLSANAM
QQLEILRNNIDGSESGSLLQCMNNTLTISGSRILRHWVTHPLCDRNMIHSRLDAVSEIAE
SMGSYKASQSINCDEEDSNVTIVCPKLHQVLSSVLTFLGRSPDIQRGITRIFHRTATTSE
FIAIIKAILVAGKQLHELHVEEEGRNTIVGKNIVHSVLLRKLVLTASSSRLIGIAAKLLS
SLNKDAAEKQDLQNLFISTDGQFSEVGEARTKVQCAKEKLDLLINSYRKQLGKRNLEFTS
VLGTTHLIELPADVKVPSNWVKVNSTKKTIRYHPPEVSTALDQLSLVTEELTHICRAAWD
NFLKEFGRYYSEFQAAVEALASLDCLHSLAVLSRNKGYVRPVFVNDNDPVQISVRSGRHP
VLESILQDSFVPNDTNMHSDGEYCQIITGPNMGGKSCYIRQVALIAIMAQVGSFVPACSA
SLHVLDGIYTRMGSSDSIQQGRSTFLEELSEASNILHSCSPRSLVIIDELGRGTSTHDGV
AIAYATLQYLLEEKRCMTLFVTHYPKIVDIKTQFPRAVGAYHVSYLTSKKDPSTDRNNDQ
RVDTMNYEDVLYLYKLVPGVSKSSFGFKVAQLAQLPASCISQAISMAVKLEAAVSNRRKN
RLACNHSNESASPDNEAKHAPKRLTEHIEDTCAEETEDLEELCTVFREIFLNINLASSVD
GDLEKCFQLLNHARGLALELINR
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaacagaaacaacaagtgatttctcgcttctttgcaccaaaccccaaaacccca
tcaaaccctactccctcttctccacccccacctccaaaaatctcaactactgtcaatttc
tcaccagccaaacgcgcccttaactcccagttcatttcttccactaaaccccccaaaacc
cctaaactctctcctcatacccacaaccccattccatctcttcaccaaagatttgtggag
aagcttttagaaccttctcaggaccttctagagccttctggggagtcgtcacttgtgggc
ccttctgttaagtacactcctctggaacagcaagtggtggagcttaaaagaaagtaccct
gatgttctgttgatgattgaagttggttacaagtttcggtttttcggacaggatgctgag
aatgctgctagggttttggggatttatgctcatatggatcataattttttgactgccagt
gtgcctacttttaggttgaatgtttatgttaggaggcttgtgggggccggttataaggtt
ggagttgttaaacagactgaaactgcggcgattaaggctcatggttcgaatcggttagga
ccattttgcagggggttatcggcattgtacactaaagctacattggaggcggctgaggat
gtgggtggtggagaagaagggttcggttcgtgtagtaattatttggtttgtgttgttgag
aatgtggacattggggggattgaaagtggatgtgattcgaagattggaattatagcggtt
gagatttcaaccggagatgttatttatggggagtttgatgataattttatgaggtctgcg
cttgaagcgttgcttttgagattgtcacctgcggagttacttcttgcagagcccctctca
aaacagactgaaaagttactatcatcatatgctggtccaacgtcaaatgtccgggtggag
catatatcacgagattccttcaatcaaggtagtgcacttgctgaagtaatggcattgtct
gataacaagagtgatagtcagctagtaaaaaacttgcacaaagaaacagaggtggaaaca
gaggcagctgactgctcgacaaatgagggaattgtagatatgcctgacatggtggtccaa
gcattagccttgaccattcgtcacctgaagcaatttggttttgagaaaattttgtgctcc
ggagcttcatttcgacccttgtccggtagtatggaaatgactctgtctgccaatgctatg
caacaattagagattttgaggaataatattgacgggtctgagtctggctccttgctgcaa
tgtatgaataacacacttaccatttctggatcaaggatcctgaggcactgggtgactcac
cctttatgcgacagaaacatgatacattctcgtcttgatgctgtgtctgagattgctgaa
tccatgggttcatacaaagcttctcaaagtattaactgcgatgaggaagactctaatgtt
actattgtgtgccccaaattacatcaggttctttcttcagttttgactttcttaggaagg
tcacctgatattcagcgtgggattacaagaatatttcatcgaacagcaacaacatcagag
ttcattgctattattaaagccatcttagttgctgggaagcaacttcatgagcttcatgtt
gaggaagaaggtcgtaacacaatagtagggaaaaacattgtgcactctgtgttgctaagg
aaattagttttgacagcttcatcatccagattaattggtattgctgcaaaacttttgtca
tccctgaacaaggatgctgctgaaaaacaggatcttcaaaatttatttatcagtactgat
ggacaattctcagaggttggtgaagcgagaacaaaagtccagtgtgcaaaagaaaaattg
gacttattgattaattcctaccgcaaacagcttggtaaacgcaatttggaattcacaagt
gttttagggacaacacacttgattgagttgcctgcagatgtgaaagttccttccaattgg
gtaaaagtgaatagtacaaaaaaaactatacgttatcatccacctgaagtctcaactgct
ctggaccagctgtcactagtcactgaggaactcactcacatctgccgagctgcttgggat
aattttcttaaagaatttggcagatactattctgagttccaagctgctgttgaagcacta
gcttctttggattgcttacattcacttgccgttctttcaagaaataagggttatgttcgt
ccagttttcgtgaatgataatgatcctgttcagatatctgtccgttctggtcgtcaccca
gttcttgagtctatattacaagatagttttgtcccgaacgatacaaatatgcattctgat
ggtgagtactgtcagatcattacaggaccaaacatgggtggaaagagttgctatattcgc
caagtcgctctcattgctattatggctcaggttggctcattcgtaccagcgtgttctgca
agtttgcatgtgttggatggcatttacactagaatgggatcttctgacagtattcagcaa
ggaagaagcacctttttagaagaactgagtgaggcttctaacatactacacagctgttca
cctcgctcgttggttatcattgatgagctcggaagaggcactagcacacatgatggagta
gcaattgcttacgctacgttacagtatctacttgaggagaaaagatgcatgactttgttt
gtcacccattacccaaaaattgttgacatcaagactcagtttcccagagctgtaggagct
taccatgtttcatatctgacgtctaagaaagatccatctacagatagaaataatgatcaa
agagttgacaccatgaactatgaagatgtgctttacctttataagcttgtaccaggtgtt
tccaagagtagctttgggtttaaagttgctcagcttgctcagctacctgcttcatgtatt
agtcaagctattagcatggctgtaaagcttgaagcagcagtaagcaacagaaggaagaac
aggctggcatgcaatcactcaaacgaatcggcttcaccagataacgaagcaaagcatgca
ccaaagagactgactgaacatattgaagatacctgtgcagaagaaactgaggacctagag
gaactttgtacggtcttcagagagatctttttgaatataaatttagctagttcagtagat
ggtgatcttgaaaagtgttttcaactattgaaccacgctagaggtcttgcattggagttg
atcaatagatga
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integrated database retrieval system
