Daucus carota (carrot): 108210808
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Entry
108210808 CDS
T05350
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03430
Mismatch repair
dcr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108210808
03460 Fanconi anemia pathway
108210808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108210808
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
108210808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
BLOC1S3
Motif
Other DBs
NCBI-GeneID:
108210808
NCBI-ProteinID:
XP_017237715
UniProt:
A0AAF1AWE5
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Position
3:61017281..61025984
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AA seq
908 aa
AA seq
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MQESTTPPAPSSSPALIRPINKGVVHKICAGQVILDLSSAVKELVENSLDAGATSIEISL
RDYGEESFQVVDNGCGISPNNFKVLALRHHTSKLAEFHDLQSLTTFGFRGEALSSLCSLG
NLTIETRTKNEAVATLLTFDRTGLLIKEEKTARKIGSTVMVKKLFANLPVRSKEFHRNIR
KEYGKLVSLLNAYALIAKGVRIVCSNTTGKNTKSVVLKTQGSGSLKDNIITVFGMDTFSS
LEPISLCISGGCKLDGFLSKPGYGSGRYMSDRQFFFVNGRPVDMPKVGKLVNELYKGANS
RQFPIAILDFTLPSRACDVNVTPDKRKIFFSEESTIFDSLREALQNIYSPGHVSFSVNRC
ANLSKRDDCSQFSPKKFSMKCSDSIKEADNKEQLEIGGIDHTTIKEGKSRSLVAEVIDID
DPLEAGIRNRQPMHHVGSSKIAQHAPLLSGEAKTPVVDNINSSGRASIIQSSLSNFITVN
KRKHESISAAFTETPLLRGGSVIHQSKKISPQISTLLSKSMVESNENEGANVVKNIGLGP
SRKCGPERVCNETDEKSSGGTGNNRVYGQELVIQEEHLPLADSVLPVTTTNNVTNESMGT
LATPVLVQSSGLAANSSVSSARNTGFTLNFSFKDLKLRRDQRLSRLKDISTSKERAQSET
CYDAATLISSKLGNIDEKEAALAAATNELERHFNKKDFGRMKVIGQFNLGFIIGKLDKDL
FIVDQHAADEKYNYERLSLSTILNQQPLLRPMSLELSPEEEVVVTMNMDILRKNGFALEE
DFNAPLGQRFKLKAVPFSKNITFGVVDVKELISILTDSQGECSMIGSYRMDTADSVCPPR
VRSMLASRACRSSVMIGASLSRNEMQKILKHLTDLKSPWNCPHGRPTMRHLVDLASLHRE
WNPEDGDL
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatcaacaactccaccggcgccgtcgagttctccggctctgataaggccgata
aacaaaggcgtggttcacaaaatttgcgccggacaagtgattctcgacctctcgtcggcg
gtgaaggagctggttgagaacagcttagacgccggcgctaccagcatcgagatctcgttg
cgagattacggtgaagagtcgtttcaggttgtggataacggttgcggcatttcaccaaac
aacttcaaggttttggcacttaggcatcatacttcaaagttagcagagtttcatgatctt
caatccttgacaacatttggctttagaggggaggcgctcagttcactttgttctttagga
aatttgactattgaaactagaacaaagaatgaagccgtggctactctcttgacctttgat
cggacaggtttgttaataaaagaagaaaaaacagcacgtaaaataggttctactgtcatg
gttaagaagttgttcgccaatttgccggtgagaagcaaagaatttcatcgcaacatccgc
aaggaatatggaaagcttgtttctttactaaatgcctatgcccttattgcgaaaggtgta
aggatagtttgcagtaacacgactggtaagaacacaaagtctgtggtacttaaaacgcag
ggaagtggatcccttaaagataacataattacagtgtttggcatggacaccttttccagc
ttggagcccataagcttatgtatatcagggggttgcaagttggatgggtttctttcaaag
cctggatatggtagtggacgatatatgagtgaccgccaatttttttttgttaatggtcgg
ccggttgatatgcctaaagttggaaagcttgtgaatgagttatataaaggtgcaaactcc
cgccaatttccaatcgcaatattggattttactcttccatctagagcttgtgatgtcaat
gtaacacctgataaaagaaaaatatttttttctgaggaaagtaccatctttgactcgtta
agagaagccttacaaaatatttattcacctggacatgtgagtttctctgtcaatagatgt
gcgaatctcagtaagcgtgatgactgctcacagttttcacccaagaagttctccatgaaa
tgcagtgattcaattaaagaagcagataacaaggaacaattggaaattggtggaatcgat
cacacaactattaaagaaggaaagagcagatcattggttgcagaggttatcgacattgat
gatcctctggaggctggtattcgtaataggcagcccatgcatcatgttggtagtagtaaa
atcgctcaacatgctccactgctttcaggcgaagcaaaaacacctgttgttgacaacata
aattcatcaggtcgtgcaagtatcatccagtcgtccctttcaaattttattacagttaat
aaaagaaaacatgaaagtatcagtgctgcattcactgagacccctcttcttagaggcgga
tctgttatacatcagtcaaagaaaatcagtcctcaaatttccactttattatcaaaatct
atggtggagtccaatgagaatgaaggtgccaatgtggtcaaaaatattggccttggacct
tctaggaaatgtggaccagaaagagtgtgcaatgaaactgatgaaaaatcttctgggggc
actgggaacaacagagtatatggacaagagttggtgattcaagaggaacatctgccctta
gctgattcagtattacctgttacaactaccaataacgtcactaacgagtcaatgggtaca
ctagctacgcctgtgctagtgcagtcttctgggttagctgcaaattcttcagtgagttct
gcgcgaaatacaggttttacattgaacttcagttttaaagacctaaagttgagaagggat
cagagactgtctagattaaaagacatcagtacttctaaagaaagagcccagtctgaaacg
tgctatgatgctgcaacgctaatatcatccaaacttgggaatattgatgaaaaagaagca
gctttagcagccgctaccaatgagctagaaaggcattttaacaaaaaagactttggtcga
atgaaggtgattggtcaattcaatctgggctttatcattggcaagttagataaggacctg
tttattgtagatcagcatgctgcagatgagaaatacaattatgagaggctctctctatct
acaattttgaatcaacagccattgctccgaccaatgagtttggaattatctcctgaagaa
gaagtagttgttacaatgaacatggatatcctcagaaaaaatggattcgctttggaagag
gacttcaatgctcctttagggcaacgatttaaactaaaagccgttccttttagtaagaac
ataactttcggagttgtagatgtaaaggagctcatctctattcttaccgatagtcaaggt
gaatgttcgatgattggtagttacaggatggacactgcagattcagtatgtccacctaga
gttcgttcaatgctagcttcgcgtgcctgtagatcatcggttatgattggagcttcactt
tctagaaacgagatgcaaaagatacttaaacatttgactgacctaaagtctccgtggaac
tgtccacatggaagaccaacaatgcgtcacttagttgacctagcaagtttacacagagag
tggaatcccgaagatggagatctgtaa
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