Daucus carota (carrot): 108210857
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Entry
108210857 CDS
T05350
Name
(RefSeq) single-strand DNA endonuclease 1 isoform X1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108210857
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
108210857
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Chromo_SEND1
XPG_I
XPG_N
XPG_I_2
Chromo_2
PEP-utilizers
Motif
Other DBs
NCBI-GeneID:
108210857
NCBI-ProteinID:
XP_017237787
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All DBs
Position
3:6744371..6752181
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AA seq
607 aa
AA seq
DB search
MGVKHLWDILDSCKKTLPLEHLRDKRVCIDLSCWIVQLHNVNKSHCSTKDKVYLRGLFHR
LRALLALNCTIILVADGAIPAIKLSTYRRRLNSESKVSQDETNSDKASSLQRNMGSEFSG
MIKEANILGMALGIPCIISLEEAEAQCALLNSESLCDGCFTSDSDIFLFGARTVYRDICL
GEGGYVVCYEMNDIETKLGFGRNSLITLALLLGSDYTPGVRKLGQEAACQIVKSIGECNV
LQRVASDGLSFANKPKVSKKQNKAPRRTNKENYSHPINENVGPVHDLPNENQYLAVIEAY
LRPKCHTADSSVVQRALGGLPFDRLKLQNICARYFEWPPEKTDEYILPKIAERKLRQFAN
LRSTSSALGLGPPLDKMPVRCPLLEIIKHRKVLGRESFEVSWEDIDGLKTSVVPADLIEC
ACPEKRVEFEEKRAQAKKQNIRKPRIKKSEKEAPISEIDKKLQDLLLDIENEHIATQKAV
LYRQSVTEKASYLNEVCQTDQSMPLSTGSKSNLEKVDQIYNSSALAVQQAEVIDLLSPSP
PMRARKVAKCQEANVPYIPNVAAKCQEAKVPSIEFIDLSDTENELSPEHTRKARELRIFL
NSIRGTP
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgaaacatctgtgggacatcttggattcttgcaagaaaacccttcctcttgaa
catctcagggacaaaagggtgtgcatagatctctcatgttggattgtacaacttcacaat
gtgaataaatcacattgttctaccaaagataaggtttatcttagaggtctctttcaccgt
cttcgagctcttctcgcgttgaattgtaccatcatcttggttgcagatggagccattcct
gccatcaaactgtcaacttacagaaggcgcttgaattcagaaagtaaggtttctcaagat
gaaacaaattcagataaagcttcttcacttcagaggaatatgggatcagaattctctggc
atgataaaagaggctaacattcttggcatggctcttgggattccttgtataattagcctt
gaagaagcggaagctcagtgtgcactacttaactcagagtcattatgtgatggatgtttc
acttcagattcagatatatttttgttcggtgcaagaacagtgtatagagatatatgtctt
ggtgaaggtggttatgttgtctgttatgagatgaatgacatcgagacaaagctcggtttt
gggaggaactccttgataactctggcacttcttcttggaagtgattatacacccggagtc
cgtaagcttggtcaggaagcagcatgccagattgtgaagtcaataggtgaatgtaatgtt
cttcaacgagttgcatcagatggattatcctttgcaaataagccaaaggtttcaaagaaa
cagaataaagctcccagacgtactaacaaagaaaactactcccatccaatcaatgaaaat
gtaggacctgtacatgatttgccaaatgagaaccaatatttagctgtgatcgaggcatat
ctgaggccaaaatgccacacagctgactcttctgtggtgcaaagggctcttggtggcctt
ccatttgaccgcctcaaacttcagaatatatgtgctcgatatttcgagtggcctccagag
aaaactgatgagtacatccttccaaagattgctgagaggaagttgaggcagttcgccaat
ttgcgttctacttcatcagcacttggacttgggcctccattggacaagatgccagtcagg
tgtcctctattagaaataatcaagcacaggaaggtcctgggaagagagagttttgaagtc
tcttgggaagatattgatggacttaaaacatcagtagtacctgctgatctcatagagtgt
gcttgtccagaaaaaagagtggagtttgaggaaaaaagagcgcaagcaaagaaacaaaac
atacgtaaaccaagaataaagaaatctgagaaggaagctcccatcagtgaaattgataaa
aagctgcaagacctgttactcgacattgaaaatgaacacattgctacgcaaaaggctgtt
ttgtatagacaatcagtaacagagaaagcaagttacttaaacgaagtatgccaaacagat
caaagcatgccacttagtacaggatccaaaagcaatctagaaaaagtggaccagatttac
aattcaagtgctttggctgtgcagcaagcagaggtaattgatctgctgagcccttcacca
ccaatgcgtgcccgtaaagttgcaaaatgtcaagaagccaatgttccgtatatccccaat
gtcgccgcgaaatgtcaagaagctaaggttccatccatcgaattcattgatttgagtgat
acggaaaacgagttatcaccagaacacacaaggaaggcaagggagttgagaatatttttg
aatagcatcaggggaaccccctaa
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