Daucus carota (carrot): 108210979
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Entry
108210979 CDS
T05350
Name
(RefSeq) F-box protein SKP2A isoform X1
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108210979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108210979
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108210979
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
F-box-like
F-box
LRR_Zer-1
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
108210979
NCBI-ProteinID:
XP_017237935
UniProt:
A0A166AMS2
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Position
3:31331688..31335023
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AA seq
363 aa
AA seq
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MFDESESSLDHSFEKLMVVSACVKMGGSGVMTEWKDIPMELLLRIVSLVDDRSVIVASGV
CSGWRDAICWGLTRLSLSWCKKNMNNLVLSLTPKFSKLQVLVLRQDKSQLQDNAVQTIAN
YCHDVKDLDLSKSFKLTDRSLHALAHGCPNLIKLNISGCSAFSDTALAYLSDFCRKLKTL
NLCGCTKAASDSALKAIGYNCTQLQYLNLGWCENVSDIGVMSLAYGCPDLRILDLCGCVL
ITDASVVALANNCLHLQSLGLYYCQNITDRAIYALAHSRVKNKQSVWESVKNRYEEEGLK
NLNISQCTALTPPAVQALCDSCPALHTCPGRHSLIISGCLNLTSVHCACAVQAHRATNNV
QAH
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgaaagtgaatcaagtttggaccatagttttgagaaactgatggttgtctct
gcttgtgtgaaaatgggtggtagtggagtgatgactgaatggaaagacatcccgatggag
cttctgctgcgaattgtgtcacttgtggatgatcgctctgtcattgttgcctcgggtgta
tgtagcggttggagagatgctatctgttggggtcttacacggctttccctttcttggtgc
aagaagaacatgaataacttggtgttatctctcactcccaaattttcgaaactgcaagtt
ctagttttgcgtcaggataaatcacagctgcaggataatgccgttcaaactattgcaaat
tattgtcatgacgtgaaggatctcgaccttagcaagagtttcaaactcactgatcgctcg
ttgcatgctttagctcatggttgccctaatcttataaagctgaacatcagtgggtgctca
gcatttagtgacaccgcccttgcatatctaagtgatttctgcagaaaattaaaaacctta
aacctttgtggatgcacaaaagctgcatctgactccgctctaaaggccattggatataat
tgtactcaactgcagtatctcaatctgggatggtgcgagaatgttagcgatattggtgtt
atgagtttagcttatggatgtcctgacctaagaatcctcgacttgtgcggttgtgttctt
ataacagatgcgagcgtagttgctttggcaaacaattgccttcatctgcagtctctcggt
ctctactattgccaaaatatcacagacagagcaatatatgctctggctcacagtcgagtg
aagaacaagcagagtgtatgggaatctgtgaaaaacagatatgaggaagaagggcttaag
aatcttaacatcagtcagtgcacagctctcactcctccagctgttcaagccttgtgtgat
tcatgcccagcacttcatacgtgcccaggaagacattcactgattataagtggctgtctc
aacttaacgtctgtgcactgtgcttgtgctgttcaagctcatcgcgcaaccaacaatgtt
caagctcactaa
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