Daucus carota (carrot): 108211391
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Entry
108211391 CDS
T05350
Name
(RefSeq) crossover junction endonuclease MUS81 isoform X1
KO
K08991
crossover junction endonuclease MUS81 [EC:3.1.22.-]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03440
Homologous recombination
dcr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108211391
03460 Fanconi anemia pathway
108211391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108211391
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
108211391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
WHD_MUS81
EME1-MUS81_C
HHH_8
HHH_2
DUF6429
Motif
Other DBs
NCBI-GeneID:
108211391
NCBI-ProteinID:
XP_017238471
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All DBs
Position
3:5323533..5331207
Genome browser
AA seq
675 aa
AA seq
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MDIRRQCACTENEQLGDHLLKKRQEIVDSPKGISDNLDKTLHKAYSSICNSKTHITNLKE
LSKIKGVGKWIIRLVQDFFDTDSCASENEDMTKKGKENKRIRRYMPQKNSVAYALLITLY
RGTASGVDYMRKPELIDAAEASGLSRAPIMPEKGAGKPRQFGSSPREWYSGWSCMKTLVT
KGLVVKSSCPAKYMLTEEGKKAARECLSRSGLATSSSTVERSLDLDESHSTDQEISYIES
VQDSRLPHVSTVHKNSVEVPLESLNRFLSMGYSKEKILLAYSDVQKSSPNKNIASLWPAV
LCRLRETEVYGSSLKFQNNLECNRRPLPSDSYIKDVLVEYSGQVGAIKNNTSSGSVAAGE
FCFPKSKSPTGSSQIDSSMRGFSTTDSQVLKQHRDGRQFESNVLTVPPLSFGEAFKDAYN
VILILDDREKFTMQGSKCRQIIENISQEFNIEIEVRRLPVGDAIWVARHKRFRSEYVLDF
IVERKKVDDLRSSIRDNRYRDQKVRLLRCGLKKMIYVVEGDLNFSEAAESLKTACFTTEI
LEGFDVQRTKGLGDTLRKYGYLTREISNYYSLLNVNDRQDSLNVCTFGDFIKRCEDLDKM
TISDVFAIQLMQVPQVTEEVAMAVLNLYPTVLSLVCAYSVLEGDISAQEEMLRTQTNGKV
NGSASRNIFQLFWGN
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgaagacaatgtgcgtgcacggaaaatgagcaactgggtgatcatttgttg
aagaaaaggcaagaaattgtggattctccaaaagggatttcagacaatcttgacaagact
ctgcacaaagcttactctagtatctgtaactccaagacccacatcacaaatctcaaggaa
ttgtcgaaaattaagggtgttggaaaatggataataaggctcgtgcaagactttttcgac
actgattcttgtgcttctgaaaatgaagatatgacaaagaaaggaaaggagaataagaga
attaggcgctacatgcctcaaaaaaattcagtagcctacgctttgttaattacactttac
aggggaactgcttctggtgttgattatatgcgtaaaccggagctaattgatgctgcagaa
gcaagtggactgtctcgtgccccaatcatgccagaaaagggagcagggaaacctagacaa
tttggaagctcccctagggagtggtacagtggatggagctgcatgaagacattggttaca
aaaggtctggtcgtcaaatcaagctgccctgcaaagtatatgctcactgaagaaggcaaa
aaggcagcacgtgaatgtctttcaagatcagggttggccaccagttcctctacagtggaa
agatctttggatttagatgaaagccattcgacggatcaggagatttcttacatcgagtca
gttcaagatagtaggctacctcatgtatcaacagtgcataagaactcagttgaagttcca
cttgaatctcttaataggtttttgagtatggggtatagcaaagaaaagattcttcttgca
tattcggatgtccagaaatcatcaccgaacaagaacatcgcttccctctggccagctgtt
ttatgccgtcttagagaaactgaggtgtatggttcaagtttgaagtttcaaaataatctg
gagtgtaaccgtcgtccattgccaagtgattcttatattaaagacgtacttgttgaatat
tcaggtcaagtaggcgctataaagaataatacatcatccggttctgttgctgcgggtgaa
ttctgtttcccaaagtcaaaatctcccacgggctcttcgcaaatagactcgtcgatgagg
ggtttctcaacaactgatagccaagtgcttaagcagcatagagatgggcggcaatttgaa
tcaaatgttctaacagtaccacctttgtccttcggagaagcatttaaggatgcatacaat
gtaattttgatcttggatgaccgtgaaaaattcaccatgcaagggtcaaaatgtagacaa
atcattgagaacatctcacaagaatttaatattgaaatagaggttagaaggcttcctgtt
ggagatgccatctgggtcgcgcgccataaacgttttcgttctgagtatgttcttgatttt
atagttgagcggaaaaaggttgatgacttgcgaagctcaatcagggataatcgttataga
gatcaaaaagtgcggcttttgagatgtggactcaagaagatgatctatgtagtcgaaggt
gatctaaatttttctgaagctgctgaaagcctaaaaacagcttgtttcacaacagagatt
ttagagggattcgatgtacaacgaacgaagggcttgggagatactctcaggaaatatggt
tatttaactcgagaaatatctaattactacagtcttctgaatgttaatgacagacaagat
agcctcaatgtctgtacttttggtgactttattaagaggtgcgaagatttggataagatg
acaattagtgatgtattcgccatacaactcatgcaggtccctcaggtgacagaggaggtt
gccatggcagttctaaatttatatccaaccgttctatcccttgtttgtgcatactctgtt
cttgaaggagacatttctgctcaagaagagatgctgaggacgcagactaatggcaaagtc
aacggatctgcgagcagaaatatattccagctattttggggaaattga
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