Daucus carota (carrot): 108211604
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Entry
108211604 CDS
T05350
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03030
DNA replication
dcr03420
Nucleotide excision repair
dcr03430
Mismatch repair
dcr03440
Homologous recombination
dcr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108211604
03420 Nucleotide excision repair
108211604
03430 Mismatch repair
108211604
03440 Homologous recombination
108211604
03460 Fanconi anemia pathway
108211604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dcr03000
]
108211604
03032 DNA replication proteins [BR:
dcr03032
]
108211604
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108211604
Transcription factors [BR:
dcr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108211604
DNA replication proteins [BR:
dcr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108211604
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108211604
MMR (mismatch excision repair)
108211604
DSBR (double strand breaks repair)
HR (homologous recombination)
108211604
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
108211604
NCBI-ProteinID:
XP_017238731
UniProt:
A0A162ALE5
LinkDB
All DBs
Position
3:complement(52043019..52046883)
Genome browser
AA seq
624 aa
AA seq
DB search
MVKTVSPDAISVIMANPSPDSSSSDYPDIVVQVLDLKLTGNSRFRFVANDGKMKLDGMFP
SSLSNEVNSGNIQNLGLIRILDYTLNDIPLKNKKYLIVTKCEVVSPPLEAEIVDVVKSEE
TGILLKPKQDVEVNNVQGLGIVLKPKQEMFAKSAAQIVHEQTGNMAPSARMAMTRRVHPL
VSLNPYQGNWTIKVRLTNKGNMRNYKNARGEGCVFNVELTDEDGTQIQATMFNEAAKKFY
DRFQLGKAYYISKGTLRVANKQFKTVPNDYEMTLNENSVVEEAIDEGTFIPETKFNFVPI
DQLGPYVNNSELVDVIGVVQSVSPTMSIRRKSNNETIPKRDITIADESKKTVVVSLWNDL
ATTVGQDLLDIADQSPIVALKSLKVGDFQGVSLSALSRTVIVVNPETPESRKLKSWYDSE
GKDSSMASVGTGLSPSSKSGGRSMYTDRVSVSYITSNPSLGEDKPVFFSTKGYISFIKPD
QSMWYRACKTCNKKVTEAIGSGFWCEGCQKNDDSCNLRYIMVAKVADASGEALLSFFNDQ
AENVIGCSADELDKLRSQDGDGSTYQMKLKEATWVPHLFRVSVVPQEYNNEKRQRITVRT
VAPVDYAAESRFLLEEITKMKASQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaaacagtgagcccggatgcaatctcagtgattatggcaaacccatctcctgat
tcatcttcttctgattacccggatattgttgttcaagttcttgatcttaaacttactggc
aatagccgcttcaggtttgtagccaatgacgggaaaatgaagcttgatggaatgttccca
tctagcttgtcaaatgaagtcaactccgggaacattcagaacttggggcttatacgtatt
cttgattatactcttaatgacattcctcttaagaacaaaaaatacctgattgtaacaaag
tgtgaggttgtgtctcctccgcttgaagcagaaattgttgatgtggtgaaatctgaagaa
acaggaattctgttgaagcccaaacaggatgtggaggtcaataatgtacaaggtcttggc
attgttttaaagccaaagcaagaaatgtttgcgaaatcagctgcacaaattgttcatgaa
caaactggaaacatggccccttctgcacgaatggcaatgacccgaagagttcatccactt
gtttctttgaatccatatcaaggaaactggaccataaaggttcggcttacaaacaaagga
aacatgcgcaactataagaatgccagaggggaaggctgtgttttcaacgtagagttgaca
gacgaagatggtacacaaattcaagcaacaatgttcaatgaggctgcaaagaagttctac
gacagatttcaacttgggaaggcctattacatatcaaagggaactctaagagttgctaac
aagcagttcaagactgtaccaaatgattatgagatgactttgaatgaaaattcagtagtg
gaggaggcaattgatgaaggaactttcattcctgaaacaaaatttaattttgttcctatt
gatcagttgggaccatatgtcaataattctgagcttgtcgatgttattggtgtggtgcaa
agtgtatcccccaccatgagtattcgcagaaaaagcaacaatgaaaccatccccaagcgc
gacataactattgcagatgagagtaagaagactgtagtggtgtcattgtggaacgatctt
gctactactgttggacaagatctgttggatattgctgatcaatctcctatagttgcactt
aaatccctaaaagttggggacttccaaggagtatcattgtctgcattgagtagaactgtt
atcgtggtgaatccagagacacctgaatctagaaaattgaagtcctggtatgattctgaa
ggcaaagatagttcaatggcttctgtcggcactgggttaagcccctcttccaagagcgga
ggtcgatctatgtatactgatagagtatctgtttcttacataacatctaacccatccttg
ggtgaggataagcctgtgtttttcagtaccaagggttacataagttttatcaagccagat
cagtcaatgtggtatcgagcttgcaagacatgcaacaagaaagttactgaagctattgga
tctggattttggtgtgaaggatgccagaaaaatgatgattcatgcaacttgagatatata
atggttgccaaagttgctgatgcaagtggtgaagctttgctgtctttcttcaatgatcaa
gctgagaatgtaattggctgctctgcagatgagcttgacaagttaagatcacaggatgga
gatgggagtacttatcaaatgaaattgaaagaagccacatgggtgcctcatctattccga
gtaagcgttgtcccgcaggaatacaacaatgagaagcgacaaaggataactgtaagaact
gttgctcctgttgattacgcagctgagtccagatttttgctggaagagatcactaaaatg
aaagcttctcaataa
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