Daucus carota (carrot): 108211765
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Entry
108211765 CDS
T05350
Name
(RefSeq) E3 ubiquitin-protein ligase ATL42
KO
K10664
E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:
2.3.2.27
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108211765
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108211765
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
108211765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
Prok-RING_4
zf-RING_16
Prok-RING_1
Cadherin_C_2
SLX1_C
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
108211765
NCBI-ProteinID:
XP_017238936
LinkDB
All DBs
Position
3:complement(38219493..38220790)
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AA seq
378 aa
AA seq
DB search
MMHRIIYLLMFIAVIRAQTPGRPRGDAVTNFKPSLSVVVGVLAVMFTLTFIFLLCVKFCR
HHSSVQNQLNQGRFAQSRSRNSGIDKTVIESLPFFKFCVLKGSRQGLECAVCLSEFQDSE
ILRLLPTCRHAFHITCVDQWLERHSSCPLCRHRVSSEDLALITYSDSLRLLMNPSDLRQD
SNLELFVQREEDNNYFSRGSSFRNSIRDEEVAIQKRSDQSEDSRGVLHKKNHKIIVADVV
LLQNRWSSVSTSDLLFLNSEMISEASSNRFPSKEVKYKNFARARDGHGRNGKISFTGVAQ
NAVKISDLDEKRSMSEIIVHPRFLASTRTDEPLSSKINGNEERQRKLWLLIARRTVEWFA
NRERGSELSENTIQSHDI
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgatgcatagaataatctacctgttgatgtttatagcagtgatcagagctcagactccc
gggaggccgagaggggatgcagtaacaaattttaagccaagtctttcggttgtggttggt
gttcttgctgttatgtttaccttgacattcatttttcttctttgtgtcaagttttgccgc
caccactcatctgtacaaaatcaactgaatcaaggaagatttgcacaatcaaggtctcga
aattctggaatcgataagacagtaattgaatcactccctttttttaaattttgtgtgctt
aaagggtcaagacaagggcttgaatgtgctgtatgtttgtcagagtttcaagatagtgag
attcttcggttacttccaacctgtagacacgcttttcacatcacttgtgttgatcagtgg
ctcgagagacattcgagctgtccactctgcaggcacagagtgagctccgaggatcttgca
ttgatcacatattcagatagtttgagattgttgatgaacccatcagacttgagacaggac
tcgaatttggaactttttgtgcaacgggaggaagataataactattttagccgggggagt
agctttagaaatagtattcgagatgaagaagtggcaatccagaaaagaagtgaccagagt
gaagattccagaggggttttgcataagaaaaatcataaaatcatcgtcgctgatgttgtc
ctgctccagaacagatggagcagtgtgagtacttcagaccttctgtttttgaattcggag
atgattagtgaagcctctagcaatagattcccttctaaggaagtgaagtacaaaaatttt
gcaagggcgagagatggacatgggcgaaatggtaaaatttcatttacaggagttgcacaa
aatgcagttaagatatccgacttagatgagaagagatcaatgtcagaaataatagtgcat
ccaaggtttttagcaagtactagaacagatgaaccactgagcagcaaaattaatggaaat
gaggaaagacaaaggaagctatggctactaattgctagaagaacagttgaatggtttgcc
aatagagaaagaggatctgagctgtccgaaaatactatacaatctcatgatatataa
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