Daucus carota (carrot): 108212796
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Entry
108212796 CDS
T05350
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108212796
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108212796
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
CarboxypepD_reg
EMC7_beta-sandw
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
108212796
NCBI-ProteinID:
XP_017239998
UniProt:
A0AAF0WRK6
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Position
3:58732403..58737076
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AA seq
665 aa
AA seq
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MEKKALCFLIFLQLLLLNQCSARSNPMNSYKDAVSSPPVQLHRLPDNVVMDNGLAQITLT
IPGGMIAGIEYKGIKNLLEYEYGSEYRGYWDLVWINGGNSTADRLNTTHFSVIAEDENKV
ELSFTRTWNPSTPNLPPMNIDKRYVMLRGSTGFYTYSIFERLGGMPATIISQTRVAFKLS
EKLFHYMAISDNRQRYMPTREDREPSRSVQLAYPEARQLTNPSNPSFKGEVDDKFQYSKD
NKDNVVHGWISDENGVGFWVITPSYEFRSGGPFKQELTSHTGPISLATFFSNHYSGDELN
LHFGKGEAWKKVYGPVFIYLNSASTKKINDLHSTLWTDAKHQALIEQQSWPYSFPLSNDY
PHADRRGTVRGRLQVRDRYLNQGLINAEFAFVGLAPVGDELSWQRESKGYQFWNQTDATG
NFLLKGVRSGTYNLYATVPGHIGRYAYKLNINITPGSAIQLGDLIHDSPRFGPTLWEIGI
PDGTAAEFHIPDARLINKLYINHDKFRQYGLWERYTDLYPKNDLVYNVGSSNYSKDWFFS
QVTRKIKDEYHPTTWQITFDLPHVIASRNYTLQLALASSNLAHLRVYVNTSPAKGNPVFT
TTEIGQDNAIARHGIHGLYWLFSVQIPGRTLVVGRNNIFLNHRSSSIPFAGIMYDYIRLE
GPPTL
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaaagctttgtgtttcttgatttttctccagttgctattgctgaatcagtgt
tctgctagatcgaatccaatgaacagctacaaagatgcagtgtcatcgcctcctgttcag
cttcatcgactccctgataatgtggtgatggacaatggattggcacaaataactctaaca
attcccgggggtatgatagctggaatcgaatacaaaggaatcaaaaaccttttggaatat
gaatatggctcagagtacagaggatactgggatctagtttggataaacggaggaaacagt
actgcagacaggctgaacacaacgcatttcagtgtcatagcggaagatgaaaacaaagtg
gagctttcatttacaagaacatggaatcctagtaccccgaatctccctccaatgaatatc
gacaaaaggtatgtaatgttgcgtggctcgactggtttttacacatattcaatatttgag
agattagggggaatgcctgctacaattatctctcaaacaagggtcgccttcaagctatca
gaaaaactgtttcattacatggcaatatctgataataggcagcgatacatgccaacacgc
gaagatcgtgaaccatcaagaagtgttcaacttgcttacccggaagcccgtcagttgaca
aatccttcaaaccccagcttcaaaggagaagtggatgataagttccaatactctaaagac
aacaaggataatgtggtacatggatggataagtgatgagaatggcgtgggcttctgggtg
atcactccaagttatgaattccgttctggaggtccttttaaacaagaacttacctctcat
actggcccaatctccttagcaacgttcttttctaaccactactctggagacgagttgaat
ttacattttgggaaaggagaggcatggaagaaagtttatgggccagttttcatctactta
aattcagcttcaactaaaaagattaatgatcttcattccacactctggacagatgctaaa
caccaggcattgattgaacaacaaagctggccatatagttttcccctgtctaatgactac
ccacatgccgatcgacgtggtacagtaagaggccggttacaagtcagggacaggtactta
aatcaagggctgataaatgcagagtttgcttttgtcggattggctccagtgggggatgag
ttatcatggcaaagagagagcaagggttaccaattttggaaccaaactgatgcaacagga
aatttcttacttaaaggtgtccgatcggggacctacaacttatatgctacagttcctggt
cacataggccgttatgcatacaaacttaatattaatattacgccaggaagtgcaatccaa
ctgggcgatcttattcatgattctcctcgatttggaccaacattatgggaaattggtatt
cctgatggtactgctgctgagtttcacattcctgatgcaaggcttatcaacaaattatac
ataaatcatgacaagtttagacaatatggcttatgggagcgatacacagatttataccct
aaaaacgacctagtctacaatgttggaagtagtaattacagcaaagattggttcttttct
caagttacaaggaaaattaaggatgaataccatccaacaacctggcagattacttttgat
ctgccacatgtcatcgctagtagaaattatacacttcaattggccttggcatcttcaaat
ttagctcatcttagggtatatgttaatacatctccggctaagggaaatcctgtgttcaca
acaacggaaattggacaggacaatgcaattgcaagacatggaatacatggattgtactgg
ctctttagtgttcaaataccaggccgaactcttgttgtgggaagaaacaatattttcttg
aatcatcgttcatcctcaattcctttcgcaggcattatgtatgactacatccgtttagaa
gggcctcctacattataa
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