Daucus carota (carrot): 108212879
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Entry
108212879 CDS
T05350
Name
(RefSeq) endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108212879
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108212879
microRNA pathway
RISC loading complex
108212879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
Dicer_dimer
PAZ
dsrm
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
108212879
NCBI-ProteinID:
XP_017240082
LinkDB
All DBs
Position
3:complement(61206331..61215170)
Genome browser
AA seq
1392 aa
AA seq
DB search
MEQNTIVYLETGSGKTLIAIMLLRSYAHLLRKPSSFIAVFLVPTVVLVSQQAEVVKMHTD
LKAGKYWGEMGVDYWNAADWKKEQGEFEVLVMTPQILLDALRHSFIKLEKIRILIFDECH
HARGKHPYACIMKDIYHPQRKTINSQLPRILGMTASPIYTKGSENGIDYWKQIRDLENLM
NSKVFTCSSESVLAGYMAMSTPKLKIYKDVDSLCLLPKKIASELESLQEKFECDIEKASI
EESRKETTRQKLSKLSLTFFFCLRELGLWLAIKAADSYKSHGSGMFVWEKQDKFGERIIT
DFSSEVFKVLCGYMPSEPDWSVWDNIEANVMKGYLSTKVICLLESLLERRDSKDLRCIVF
VERVITAITLCRLLDVLLPSLSGWKTKYIAGSNTLVQLQSRKTQNEIIEELRKGAANIIV
ATSVLEEGLDVQNCNLVIRFDLSNTVCSFIQSRGRARMQNSEFLLLVKSGDNATLSRVKT
YLASGQVMRRESLRHASLPCQPPDTDIYQEAFYQVDSTGAIVTLTSCVPLIYFYCSRLPS
DGYFKPLPRFKIYNELQKCTLCFPKGCPLPEVTVHGNLKTLKQIACLEACKKLHIMGALT
NNLVPDMVEEENAEDIGHPEYVDEQDIYVPSELVGQDPNNGAKIYYCYLLELDRKFSHDI
AVNNLMLAASHELNIDEDSNLAFELEVDRGNLSVHIKYARSISLTSEQVHMCRQFQVKTF
RILFSNNYKKLNETFDVFHQWKDSTVYDYLLLPTTGSQHSLLIDWRCIGSVLYKGNKICH
DRARCPFPKDEYNIVKTRNDLVCRCVLENSLVCTPHNGYVYYIVGTLYGMNGSSVLDLND
GESITYKEYYEKRHAIDLLYGREHFLKGRHVFRVQNHHHKYRMQKEQAVEQSKAYVELPP
ELCSIIMSPISAATLYSFSFASAIMHRIESLLIASSLKKMLRDYYYPNVTAITKIPTIKV
LEAITTKNCRENFNLESLEALGDSFLKYAACQHVFTMNQNTHEGILSIKKNRIISNANLC
KLGCSRKLPGLIHNEPFDPKMWIIPGDQKEAFHEVQLSTGTKVFTKGIQKVKSKVVADVV
EALIGVFLSYGGEGAALSFMNWLGIEVNLLNIPYKRSFPANPEKLLNVSYLESILNYSFK
DASLLVEALTHGSFMLPEIPQCYQRLEFLGDSVLDYLITLHLYNKYPGITPGLLTDLRSA
SVNNDCYSLSAVKVGLQKHILHTSEKLQEKIASSIQTLDPLLMRSTFGWGSENSLPKVLG
DVIESLAGAIFVDSGYRKDVVFKSIRPLLEPLVSPETLKLQPVRELHQLCQKERYLLKKP
FVSCNDGVAAVTVEVEANGVIHTESCTASNKAEAKKLAFKAVLKSLKESMSTGPHPTPLL
SSPKGEKRNEEK
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaacactattgtgtatctggaaactggttctgggaaaaccctgattgctatc
atgcttctgcgtagctatgcacaccttttgcggaaaccatcgagttttatcgctgtcttt
ctggtccccactgtggttctggtttcccaacaagctgaggttgtgaaaatgcacacggat
ttaaaagctggaaagtattggggagagatgggagtggattattggaatgctgccgattgg
aagaaggagcagggtgaattcgaggttcttgtgatgacaccacaaatattgcttgatgcc
ttgaggcacagttttataaagcttgagaagataaggatcctaatatttgatgaatgccac
catgctagaggcaaacacccttatgcttgcattatgaaggatatttatcaccctcaaagg
aaaacaattaactcgcagcttcctaggatattagggatgactgcttcgcctatctacact
aaaggttcagaaaacggaatagattactggaagcaaatccgtgaccttgagaacctaatg
aattcaaaggtttttacttgcagtagtgagtctgtgttggcagggtatatggcaatgtca
actccgaagctcaagatttataaagatgtggatagtctttgcttgttacccaaaaaaata
gctagtgagttagagagtttgcaagagaagttcgaatgtgacattgaaaaagcaagcatc
gaggagtcccgtaaagaaactacaaggcaaaaattatctaaactaagtttaacatttttc
ttttgtttgagggaactcggactttggctggcaataaaggcggcagattcttacaaatcc
catggaagcgggatgtttgtatgggaaaaacaggataagtttggggagaggattataaca
gattttagctcagaagtatttaaagttctctgtggttatatgccttctgaacctgactgg
tctgtatgggataatattgaagcaaatgtgatgaaggggtatctatcaacaaaagttatt
tgtctcctcgaatctcttcttgaacgcagggactcaaaagatttgagatgtattgttttt
gtagaaagggttataacggccatcacactttgtcgcctattggacgttttgcttcctagc
ctgagtggatggaaaacaaaatatatagcaggcagcaatactcttgtacagttacagagt
aggaagacccaaaatgaaattattgaagaacttcgtaagggcgcggcaaacattattgtt
gcgacatcagttcttgaagaagggctggatgttcagaactgcaatctggttatacgattt
gacctatcaaatacagtgtgcagttttatacaatctcgaggtcgggctaggatgcagaac
tcagaatttctgttattggtgaaaagtggcgacaatgctacactttctagagtaaaaacc
taccttgctagcggacaagtaatgaggcgggaatcattgcgacatgcttcactgccttgt
cagccacctgatactgatatatatcaagaagcattctaccaggttgactctacaggagct
attgtcacactgacatcctgtgtgcctctgatttacttctattgctctcgcctaccttcg
gacggatacttcaagcccttgccgagatttaaaatttacaatgagttgcagaagtgcaca
ttatgtttccccaaaggttgcccattacctgaggtaactgttcatggaaatctcaaaaca
ctgaaacaaattgcatgtctagaagcatgcaaaaagttgcatataatgggagccctaacg
aacaatcttgtaccagatatggtggaagaagaaaatgctgaagatattggtcatccggag
tatgtcgatgaacaggatatctatgttccatcagaacttgtaggtcaagatcctaacaat
ggtgcaaaaatatactactgctatctgctagagttggatagaaaatttagccatgatatt
gcagttaataatctaatgcttgctgctagtcatgagcttaatattgatgaagacagcaac
ttggcttttgaattggaggttgatcgaggaaatttatcagttcacattaaatacgctaga
tctataagtctcacttctgaacaggttcacatgtgccggcagtttcaagtgaaaactttt
aggattctctttagtaacaattataaaaagttgaacgagacctttgatgtttttcaccaa
tggaaagactctactgtttacgactatctcctactcccaactactggctcacagcattca
ctgcttattgattggagatgtattggttctgttctttataaaggcaataaaatatgccat
gatcgtgcacggtgcccttttcctaaagacgaatataatattgtgaaaacaagaaacgat
cttgtctgcaggtgtgttctggagaattctttggtctgcactccccacaatggttatgta
tactacatagtgggaacattatatggcatgaacggaagttcagtattggacttgaacgac
ggagaatctataacatacaaagaatactatgagaaaaggcatgccatcgacttgctatat
gggcgggaacattttcttaagggaagacatgtatttagagtacaaaatcaccatcacaag
tatagaatgcagaaggaacaagctgtggaacaaagcaaagcgtatgtggaattgcctcct
gaactttgttccattatcatgtcaccaatatccgcggcaacattatactcgttttcattt
gcctcagcgatcatgcatagaatagagtctttgctcattgctagcagtttaaaaaaaatg
ctgagagattactattacccaaatgttactgctataactaaaattccaacgatcaaggtg
ttggaagctattaccaccaagaattgccgtgaaaactttaatttggagtcactggaggct
cttggagattcatttctgaaatatgctgcctgtcagcatgtgtttacaatgaaccaaaat
acacatgaaggaattcttagtattaagaaaaatagaatcatatctaatgctaacttatgc
aagctcgggtgcagccgtaaactcccgggtttaatacataatgaaccctttgatcccaag
atgtggattattcctggtgaccaaaaagaggcttttcatgaagtacaactgtctaccggg
actaaagtatttactaaaggaatacaaaaagtaaaaagtaaggttgtagctgatgttgtc
gaggcattgattggtgtattcctcagctatggcggtgaaggtgcagcattatcattcatg
aattggcttggtattgaggtcaatttattgaatataccatataagaggagctttccagca
aatccagaaaagctccttaatgttagctatcttgagtcaatacttaattattcttttaaa
gatgcttcattacttgttgaagcattaacacatggttcgttcatgctccctgaaattcct
cagtgttatcagcgtcttgagtttcttggagattctgtactggattatctcattactctg
catctatacaataaatatcctggaattacgcctggattgctaactgatctgaggtcagct
tcggtgaacaatgattgttattccctatctgcggttaaggttggattgcagaaacacatt
ctccacacctcggaaaaacttcaagagaaaatagcatcctctattcagactttagatcct
ttgttgatgcgttcaacatttggatgggggtctgagaactctcttcctaaggttcttgga
gatgtgatagaatctctggcaggagcaatcttcgttgattcgggttacagaaaggatgtt
gtattcaagagcatacgaccacttttggaacccttggtttctcctgaaacactcaagctt
caaccagtaagagaattacatcagttgtgccaaaaggagcgctatctgttgaaaaagcct
tttgtgtcatgtaatgatggtgtggcagctgttacagtcgaggtcgaagcaaatggagtc
atacacacagagtcatgcactgcttctaacaaggctgaagccaaaaaacttgctttcaaa
gctgttttgaagtcgttaaaagagagcatgtccaccggacctcaccctactcctctcctc
tcctctcccaaaggtgaaaagagaaacgaagaaaaatga
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