Daucus carota (carrot): 108213289
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Entry
108213289 CDS
T05350
Name
(RefSeq) polyadenylate-binding protein 8 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108213289
09123 Folding, sorting and degradation
03018 RNA degradation
108213289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108213289
03041 Spliceosome [BR:
dcr03041
]
108213289
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108213289
mRNA cycle factors
Stress granule specific factors
108213289
Spliceosome [BR:
dcr03041
]
Complex C
Other components
Complex C specific factors
108213289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_RdRP1_2
RRM_MARF1
RRM_7
RRM_Nup35
YflT
BRAP2
Motif
Other DBs
NCBI-GeneID:
108213289
NCBI-ProteinID:
XP_017240557
UniProt:
A0A165ZI56
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All DBs
Position
3:complement(1567045..1573999)
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AA seq
650 aa
AA seq
DB search
MAQIQVQQPQIQVTGGNGVAAVVAVNGGGNQLSTTSLYVGDLDHSVTDGQLYDMFAQVAS
VASVRVCKDITTNLSLGYGYVNYNSPQDAARAMDVLNFTPVNGKSIRVMYSNRDPTIRKS
GVGNIFIKNLDKSIDNKALHETFSSFGTILSSKIATDPSGQSKGYGFVQFDSKEAAQNAI
DKLDGMLMNDKQVYVGHYIRKEDRDAALSRAKFNNIYVKNLSSATTEDDLKKLFGEFGTI
TSAVVMRDGEGKSRCFGFVNFDNPDAAAEAVEAINGKKFDDKEWYVGKAQKKSERLMELR
SQFEQIAKEQSDKFKGLNLYVKNLDDTIDDDKLKNLFSEFGTITSCKVMRDPRGISRGSG
FVAFSTPEEATRALAEMNGKMTVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPAVAP
RMPIYPPGAAGFGQQLFYGQGPPAMFPSQAGFGYQQQMVPGMRPGGAPMPNFYMPMVPQG
QRPAGRRGAGPIQQTQQPVPLMQPQMMPRGRMYRFPPGRNVTDVTMPGVGGGVLPIPYEI
GGALPREAVTYPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEM
DQTEVLHLLESPDALKAKVAEAMEVLKNVSQAATPADQLANLSLNENLAS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaggtgcagcagccgcagattcaggtgacgggcggcaatggggtggcg
gcggtcgtggcggtgaacggcggagggaaccagttgtcgacgacgtcgctttatgtgggt
gatttggatcatagtgtgacggatggacagctgtatgatatgtttgctcaagtggcttca
gtggcgtctgttagggtttgtaaggatatcaccactaatctttcgcttggatatggctat
gtgaattacaatagtcctcaggatgcggcaagggcaatggatgttctgaactttactcca
gtgaatggcaaatcaattcgggtcatgtactctaatcgtgatcccactattcggaagagt
ggagtaggaaatatatttatcaagaatctggacaagtctatcgacaacaaagctttacat
gagactttttcgagttttggcactatcctttcttctaagatagcgactgatccatctggg
cagtctaaaggttatggttttgttcagtttgatagcaaagaagctgcacaaaacgcgata
gataagctagatggcatgttgatgaatgataaacaagtttacgttggacattacatccgt
aaagaggaccgagatgctgctttgagtagggcaaagttcaacaatatatatgtgaaaaat
ctttcctcagctacaactgaagatgatcttaagaaattatttggtgaatttggaacaatt
actagtgcagtagtgatgagagacggggagggtaaatctagatgctttggatttgtcaac
tttgataatccagatgctgctgctgaggctgttgaggccataaatggaaagaagtttgat
gataaggagtggtatgttggcaaagcccagaagaaatctgaaagattgatggaattaaga
agtcagtttgagcaaatcgcaaaggaacaatcggacaagtttaaaggattgaatctgtat
gtcaaaaatcttgatgacacaattgatgatgataaactgaagaacttattctctgaattt
ggaactatcacatcttgcaaggttatgcgtgatcccaggggaattagccgaggatctggt
tttgttgctttctcaactcctgaagaagctactcgagctctcgctgagatgaatggaaag
atgacagtgagcaaaccactttatgttgcccttgctcagcggaaagaggagagaagagca
aggctgcaggcacaattctctcagatgaggccagttgcaatgccacctgccgtggctcct
cgtatgccaatctatccacctggagcagctggtttcggacagcaactcttttatgggcaa
ggccctcctgccatgtttccttcccaggctgggtttggctatcagcagcagatggtgccg
ggaatgaggccaggtggtgctcctatgccaaatttctacatgcctatggtccctcaggga
cagaggcctgctggaaggcgaggagcgggtcctatacaacagactcagcagcctgttcct
ttaatgcagccgcagatgatgccaagggggcgcatgtatcgttttccaccaggtcgcaat
gttacagatgtgaccatgccaggtgttggtggaggagtgctccctattccttatgagatt
ggtggcgcacttcctcgagaagctgtaacttatcctatgccaattacagcattggcttct
gccctagcaaatgcacctgctgatcagcagagaactatgttaggtgaaaatctttacccg
ctagtggatcagctggagcatgatcatgcagctaaggtcacaggcatgctcctggaaatg
gaccaaactgaagttttgcacttgctcgagtcacctgatgcactaaaggctaaagttgcg
gaggcaatggaggttttgaagaacgtgtcacaagctgctacgccagctgatcagctggct
aacctttcactcaatgaaaatctcgcctcttaa
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