Daucus carota (carrot): 108214021
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Entry
108214021 CDS
T05350
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04142
Lysosome
dcr04144
Endocytosis
dcr05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108214021
04142 Lysosome
108214021
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
108214021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108214021
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108214021
Membrane trafficking [BR:
dcr04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
108214021
Exosome [BR:
dcr04147
]
Exosomal proteins
Proteins found in most exosomes
108214021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
108214021
NCBI-ProteinID:
XP_063945549
LinkDB
All DBs
Position
3:55220619..55233294
Genome browser
AA seq
1729 aa
AA seq
DB search
MAAANAPITMKEALTLPSIGINAQFITFTNVTMESEKYICVRETAPQNSVVIIDMSMPSQ
PLRRPITADSALMNPNSRILALKASLPGTTQDHLQIFNIELKAKIKSYQMPEQVVFWKWI
TPKLLGLVTQASVYHWSIEGESDPVKMFDRTANLSNNQIINYRCDPSEKWLVLIGIAPGS
PDRPQLVKGNMQLFSVDQQRSQALEAHAASFASFKVQGNENPSILISFATKSSNAGQITS
KLHVIELGAQPGKVAFTKKQADLFFPPDFNDDFPVAMQISHKYSLIYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTSEASSAGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLEL
AVNLAKRGNLPGAENLAIQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ
AGQTPPLLQYFGTLLTKGKLNSFESIELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYAELPDIKRVIVNTHAI
EPQVCLSFTCLCLLSSSRDLSLEYISLFQSLVEFFGTLSKEWALECMKDLLLVNLRGNLQ
IIVQVAKEYSEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPEIHFKYIEAAAKTGQ
IKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYI
EGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQ
FLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVA
YRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWDKVLNPENEYRRQLIDQVVSTALP
ESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRV
MDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIQNIARAVEFAF
RVEEDAVWSQVGKAQLRDGLVSDAIESFIRADDATQFLEVIHAAEDGDVYNDLVRYLLMV
RQKTKEPRVDSELIYAYAKIDRLGDIEEFILMPNVANLHNVGDRLYDEALYEAAKIIYAF
ISNWAKLAVTLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIVQV
DDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRHEKLMEHIKLFS
TRLNIPKLIRACDEQQHWKELVYLYIQYDEFDNAASTVMNHSPDAWDHMQFKDIAVKVAN
VELYYKAVHFYLQEHPDLINDMLNVLALRVDHTRVVDIMRKAGYLHLVKPYMVAVQSNDI
SAVNEALNEIYVEEEDYERLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGR
WKQSIALSKKDNLYKDAMETASQSGDRELAEDLLVYFIEQGKKECFASCLFVCYDLIRAD
VALELAWMNNMIDFAFPYLLQFIREYTGKVDELIKDKIEAANEMKAKESEEKDVIKQQNM
YAQLLPLALPAPPGMGGAGMSGYGQPPPPGMGGMGMPPMPPYGMPPMGY
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcgaacgctccgatcactatgaaggaggcgcttacgttgcctagtattggg
atcaatgcacaattcattacctttacgaatgttaccatggaatcagagaagtatatatgt
gttcgggagactgcaccacagaacagtgttgtgattattgatatgagcatgccatcgcag
cctttgaggaggcctattactgccgattcggctctcatgaatccgaattcgagaattctt
gctttgaaagcttcacttcctggaactactcaggaccacctacaaatatttaacattgag
ctgaaagcaaagatcaagtcatatcaaatgccggagcaggtggtcttttggaagtggatc
acacccaagttgttgggtttggtcactcaagcatctgtttatcattggtcgattgaaggc
gagtccgatcctgtaaagatgtttgatagaacagctaacttatccaacaatcagatcata
aattatagatgtgatccttcagagaaatggttggttctgattggaattgctcctggctca
cctgataggccccaattggtaaagggcaacatgcaacttttttctgtggatcagcagcgc
agtcaagctcttgaagcacatgcagcctcatttgcttcatttaaggttcaagggaatgag
aatccttcaattctcatttcttttgctacaaaaagctctaatgctggacagattacatca
aagttgcatgttattgagctcggtgctcagccaggaaaagtggcttttacaaagaaacaa
gcagacctgttctttcctcctgattttaacgacgattttccagttgctatgcagatatcc
cataaatacagtttaatctatgtgatcaccaagttgggacttctattcgtttatgacctt
gagacagcaactgcagtctacagaaataggatcagcccagacccaattttcttgacatca
gaagcttcgtctgctgggggtttttatgccatcaatagacgaggtcaagttttgcttgct
actgtaaatgaggctactattgtcccgtttgtcagtggccaattgaataatcttgagctt
gctgtcaatcttgctaaaagaggaaacctacctggtgcagagaacttggcaattcagcgt
ttccaagagttatttgctcaaacgaagtacaaggaggctgctgagctagctgcagaatct
cctcaaggaatactccgtacccctgacacagttgccaaatttcagagtgttcctgtacaa
gctggacagaccccacctctgctacagtactttgggactctactaacaaagggaaagcta
aattcattcgagtccatagaactttctcgccttgttgtgaatcaaaataagaaaaatctt
ttggagaattggttggcggaggacaagcttgaatgtagcgaggaacttggggatcttgta
aagactgttgataatgatcttgccttgaaaatatatatcaaagcaagagcaaccccaaaa
gttgttgctgcttttgctgaaagaagagaatttgacaaaattcttatatactccaagcag
gtcggctatacacctgattatctgttccttctgcaaacaatccttagatcagatccccag
ggagctgttaattttgcacttatgatgtcccagatggagggaggttgtccagttgattac
aacactataaccgatctttttcttcagaggaacctgatccgggaggcaacagcatttttg
ttggacgtcttgaagccaaatttgccagaacatgctttcctgcaaactaaggttctggaa
ataaaccttgttaccttcccgaatgttgctgatgctattttggcaaatggcatgtttagc
cattatgatcgtcctcggattgcccaactttgtgaaaaagctggtctttatgttagagct
cttcagcattacgcggagttacctgatatcaaacgtgttattgtcaatacccatgctatt
gagccacaggtttgtctttcattcacgtgcttgtgcttgctatcatcttctcgtgatttg
tccttagaatatatctctttgtttcagtcccttgtggaattctttgggaccttatcaaaa
gaatgggctttagagtgcatgaaggaccttttacttgtcaatctgagaggcaaccttcaa
attattgtccaggttgctaaagaatattccgagcaattgggagttgaagcttgtattaaa
ctgtttgagcaatttaagtcgtacgaggggttgtacttcttccttgggtcctatctgagc
tccagtgaggatcctgagattcacttcaagtacattgaagcagctgctaagactggacaa
attaaggaagttgagcgtgtgacacgagaatcaaatttctatgatgcggaaaaaacaaag
aactttctaatggaagcgaaacttccagacgcacgaccactgattaatgtttgtgatcgc
tttggtttcgttccagatcttacacactacctatatacaaacaatatgcttcggtatatt
gaaggttatgtgcagaaggtcaatcccggaaatgctcctttggttgttgggcaattgcta
gatgatgagtgtcctgaagatttcattaaaggtctgatcctatctgttcgatctctactt
ccagttgaacccctggttgatgagtgtgagaaaaggaatcgccttcgtttacttactcag
ttcttggagcatcttgtgagtgaaggaagtcaagatgtacatgttcacaatgctcttggt
aaaatcatcatagatagcaacaacaacccagaacacttcctcactaccaacccgtattac
gattcacgcgtggttggaaaatactgtgagaagcgtgaccctacacttgctgtggttgct
taccggagaggtcaatgtgatgatgaattgattaatgttacgaacaagaactctttgttc
aaattgcaggccaggtatgttgtcgaaaggatggatggagatctctgggacaaagttctt
aatcctgaaaatgaatacagaagacagctcattgatcaagttgtttctactgctcttcct
gaaagcaagagccctgagcaagtatctgccgctgtcaaagctttcatgactgctgatctt
cctcatgagctcattgagctgctggaaaagatagtgcttcagaattctgcattcagtggc
aactttaatctgcagaacttgcttatcttaactgctattaaggctgatccatctagggta
atggactacattaataggctggataattttgatggacctgccgttggggaggtggcagtg
gaagcccagttgtatgaagaggcttttgcaatttttaagaagtttaacttgaatgtccaa
gctgtcaacgtactactggataatattcaaaatattgcacgtgctgtagagtttgctttc
cgcgttgaagaagatgctgtttggagccaggtgggtaaagctcagctgagggatggttta
gtgagtgatgcgattgagtcatttattcgtgctgatgatgctactcaatttctggaagtt
attcatgctgctgaggatggggatgtatataatgacttagtaagataccttttgatggtt
aggcagaagacaaaagagcccagggtggacagtgaactcatttatgcctatgcaaagatt
gatagacttggtgatattgaagagtttattctcatgccaaatgttgctaacctgcataat
gttggagatcggttgtatgatgaagccttgtatgaagcagcaaagattatctatgcattt
atttcgaactgggccaagttggccgtaactcttgtcaaactaaaacaatttcaaggtgct
gttgatgctgctcggaaagcaaatagctcaaagacatggaaagaagtttgttttgcttgt
gttgatgcagaagagttccgtttggcccagatttgtgggctcaatattattgtccaggtc
gacgacttagaagaggtcagtgaatattatcagaacagaggatgcttcaatgaactgatc
tctcttatggagagtggtttagggttggaacgtgctcatatggggattttcactgagttg
ggggtcctttatgctagatatcgccatgagaagctcatggaacatattaaactattttct
acccgtctcaacatccccaagcttattcgagcttgcgatgaacaacaacattggaaagag
cttgtgtatttgtatattcaatatgatgaatttgacaatgctgcttcgactgttatgaat
cattctccagacgcttgggatcacatgcaattcaaagatattgcagtaaaagtagcaaat
gtagagctttattacaaggctgtccacttctacttacaagagcatccggatctcatcaat
gacatgctcaatgttcttgcacttcgagtggaccatacacgtgtggtggacataatgcgg
aaggctggttatctgcatcttgtgaagccgtacatggtagctgttcagagcaatgatatt
tctgcagtgaatgaggctctaaatgaaatctatgttgaggaggaagactatgaaaggttg
agggagtcaattgacttgcatgataacttcgatcagatcggccttgcccagaagattgag
aagcatgaacttctcgagatgagacgtgtagctgcttacatttataaaaaggctggaagg
tggaagcagtcaattgcgctttctaagaaagacaatctttacaaagatgccatggagact
gcttcacaatctggagatcgtgaacttgccgaggacttgcttgtatatttcattgagcag
ggaaagaaggaatgttttgcatcttgccttttcgtttgttacgacttgattcgtgcagat
gtcgctcttgaactcgcttggatgaataacatgattgactttgcattcccgtacctattg
cagtttatacgtgaatacacaggcaaagttgatgaactaatcaaggacaaaatagaggca
gcaaatgaaatgaaggctaaagaaagtgaagagaaggatgtgattaagcaacagaatatg
tatgcacagttgttgcctcttgctttacctgcaccgccgggtatgggaggagctggaatg
tcaggttatggccagccaccaccaccaggtatgggtggaatggggatgcctccaatgccc
ccatacggcatgccaccaatgggatattga
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integrated database retrieval system
