Daucus carota (carrot): 108214140
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Entry
108214140 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108214140
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108214140
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
108214140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_30
AAA_19
DEXQc_Suv3
IstB_IS21
PARP_regulatory
TBSV_P22
Motif
Other DBs
NCBI-GeneID:
108214140
NCBI-ProteinID:
XP_017241431
UniProt:
A0AAF0WTF5
LinkDB
All DBs
Position
3:complement(51852023..51887091)
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AA seq
2093 aa
AA seq
DB search
MLIQLPRLTNSLRDPFDADEAYLQRKLHLQNLINKRSSASSLKESELARKIVYKWDEASS
EVRQAYKQFIGAVVELIGGEVVDEEFREVALTVYRIFCHHVEEQEEYRRIKKHREELDKL
LGRVVPDASLHKVSLLAQRLLSLQPNTSDAVSLLENQINGTGDDMEFGADLVFKPPSRFL
VDVSLEYEDLLEESTSNSSIPQGWYENDNNANYHPESVGGNFDLNWLRDACDLIVKGSNS
QLPRDELAMAICRVLDSEKPGDEIAGDLLDLVGDSAFETVQDLITHRKELVDAVHHGMFV
LKSDQKVPGSQSRMPSYGTQVTVQTESERQIDKLRRKEGKKQRRGTDQGNDNELSSMSFG
SLIQASEKKSIFDDLIGTGGESNATALPQGTVKKHYKGYEEVTIPPTQTAPMKPGEKLIE
IKELDDFAQAAFQGYKSLNRIQSRIFQTTYNTNENILVCAPTGAGKTNIAMIAVLHEIGQ
HFKDGYLHKDEFKIVYVAPMKALAAEVTRTFGHRLGPLNMIVKELTGDMQLSKNELEETQ
MIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQS
MIRIVGLSATLPNYLEVAQFLRVNPEAGLFFFDSSYRPVPLAQQYIGISEPNFRARIELQ
NEICYKKVVDSLKNGYQAMVFVHSRKDTGKTAEKLVELAKINEDHELFRNEDHPQYQLLK
KDVLKSRNRELVQLFDNGVGIHHAGMLRSDRGLTEKLFSEGLLKVLVCTATLAWGVNLPA
HTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLL
TSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWDEV
IADPSLSLKQRSLVTDAARSLDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNE
MLRRHMNDSEVIDMVAHSSEFENIVVRDEEQNELEKLAQTSCPLEVKGGPPSKHGKVSIL
IQLYISRGSIDSFSLISDAAYISASLGRIMRALFEICLRRGWCEMTSFMLEYCKAVDRQI
WPHQHPLRQFDKDISLDILRKLEERGADLDHLHEMQDKDIGVLIRYAPGGRLVKQYLSNF
PSVQLSATVSPITRTVLKVDLLITPDFVWKDRFHGSSERWWILVEDSENDHIYHSELFTL
TKRMARSEAQKLTFTVPIFEPHPPQYYIRAVSDSWLQAEALYAISFHNLALPEGHTSHTE
LLDLKPLPVTALGNKAYEALYTFSHFNPIQTQAFHVLYHTENNVLLGAPTGSGKTISAEL
AMLHLFNSQPDMKVIYIAPLKAIVRERMNDWKKRLVSQLGKKMVEMTGDFTPDMMALMSA
DIIISTPEKWDGISRNWHSRGYVTKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQTE
RSVRFVGLSTALANAHDLSDWLGVGENGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM
NKPTYAAISTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSMAEEALQMIVS
QVADQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVI
IKGTEFYDAKSKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPF
PVESSLREQLHDHMNAEIVSGTISHKEDAVHYLTWTYLFRRLTVNPAYYGLVGTEHGTLS
TYLSSLVQHTFEDLEDAGCIKITEDSVAPTMLGSMASQYYLKYMTVSMFGSNIGPDISLE
VFLLILSGASEYDELPVRHNEENFNEALSKKVPYEVDQNSLDDPHVKANLLFQAHFSQLE
LPISDYITDLKSVLDQSIRIIRAMIDICANSGWLSSTMTCMRLMQMVMQGLWFNRDSHLW
MLPHMTDDLLNLLLKNSISSVQQLLVLPKQHLQSVVGSSTASWLYQDLQHFPNVQVKLKI
PRKEPNSLSLPGLNIRLEKTNLQNKSSRAFTPRFPKVKEEAWWLILGNTSTSELYAMKHV
SFSDRLVTHMKLPSTTFTLKGMKMILVSDCYLGFEQEYTVEDLIGTQQLEAGR
NT seq
6282 nt
NT seq
+upstream
nt +downstream
nt
atgttgattcaacttcctcgattaacgaactcacttagagatccatttgatgctgatgaa
gcttatttacaacgcaaattgcatcttcaaaacctgattaataaacgcagttctgcaagt
tcactaaaagaatcagaactcgccaggaagattgtgtataaatgggatgaagcttctagt
gaggttagacaagcgtacaaacagtttattggtgcagtggttgagttgatcggaggggag
gtggttgacgaagagtttagagaagttgcattgactgtgtatagaattttttgtcaccat
gtcgaagagcaagaggaatatagacgaattaagaaacatagggaggaattggacaaacta
cttggccgtgttgttccagatgcaagtctgcataaagtgtctttattagcacaaaggctt
ttatcattgcaacctaatacttcagatgcagtttcccttctagagaatcaaataaatgga
actggtgatgatatggaatttggtgcggatcttgtttttaaacccccatctcggtttctg
gttgatgtttctcttgagtacgaagatttgctagaggaaagcacttcaaattcttcgatt
ccgcagggatggtatgagaatgacaataatgcaaattaccatcctgaaagtgttggggga
aactttgacttgaattggttaagagatgcttgtgatctgatagtcaagggaagtaattca
caactacctcgagatgaattggctatggctatctgcagggttcttgattcggagaaacct
ggggatgagatagctggtgacctgttggatctcgttggtgatagtgcatttgaaacagtg
caagaccttataactcataggaaggaacttgttgatgctgttcatcatgggatgtttgtg
ttgaagtctgaccaaaaggtcccgggttctcagtcacgcatgcctagttatggtactcag
gtgacagtgcagacagaatcggagaggcaaattgataaacttcggcgcaaggaagggaag
aaacagagacgtgggactgatcaagggaatgacaatgagttatcttccatgagttttggt
tccttaattcaagcgagcgagaaaaaaagtatttttgatgatctgattggtactggtgga
gagtccaatgctactgccctgcctcaaggcacggtgaagaagcattataagggatatgaa
gaagttacaattcctccaacacaaacagcaccaatgaagcctggggaaaaactgattgag
ataaaggagttagatgactttgctcaagctgctttccagggttacaagtccctgaaccgc
attcagagcagaatcttccaaacaacatataatactaatgaaaacattcttgtttgtgct
ccaacaggagctggaaaaacaaatatcgccatgattgctgttctacatgagattggacag
cacttcaaggatgggtacttgcataaagatgaatttaagattgtctatgttgctcctatg
aaggcactagctgcagaagttacaagaacttttggtcatcgattaggtcctttaaacatg
attgtgaaagaactcactggggatatgcaactctcgaagaatgaactagaagaaacccag
atgatagttacaacgcctgagaaatgggatgtcattacgcgcaaaagcagtgacatgtct
ctctcaatgttggttaaactgctcatcattgatgaagtacatcttctaaatgatgacagg
ggccctgtaatagaagcattggttgctcgaactcttcgtcaggtagaatctacccagagt
atgataaggattgtgggactatcagctaccctacccaattatctggaggttgcacaattt
ctgagggtaaatcctgaagccggactattcttttttgattctagctatcgtccagtacct
cttgcacaacagtatattggaattagcgaaccaaattttcgtgcacgtattgagcttcag
aatgaaatttgctacaagaaggtagtggattcattgaagaacgggtaccaggctatggtt
tttgttcattccaggaaagacacaggaaaaacagccgaaaaactggttgaacttgccaag
attaatgaggaccatgagctattcaggaatgaagaccacccacaatatcaattactgaag
aaggatgttttgaagtcgagaaatagggaacttgtacagctctttgataatggagttggt
atccatcatgctgggatgttacgttctgatagaggcttgactgaaaagctattttccgag
ggactcttaaaggttcttgtttgcacagcaactttagcatggggtgtaaacttacctgct
catactgtcgtcataaagggtactcaattgtatgatcctaaggctggtggatggcgagat
ctgggcatgcttgatgttatgcagatttttggacgtgctggacgaccccaatttgacaaa
agtggggaaggcatcattattacatctcatgacaaactagcctactatctacgattgtta
acaagtcaacttccaatagagagtcagtttatcagctccttaaaggacaatttaaatgcc
gaggtggcattgggtacagtaacaaatgtcaaggaagcttgtgcttggcttggttacaca
tatctctttataaggatgaaaatgaatcctctagcatatggcattggttgggatgaggta
attgcagatccttctttaagtttgaagcaaagatctcttgtcacggatgctgcgcgttca
cttgataaagctaaaatgatgcggtttgatgagaagagtggcaatttttactgtacagag
ctgggtcgtattgctagtcatttttatattcagtattctagtgttgaaacatataatgaa
atgttgagacgccacatgaatgacagtgaggtgattgacatggtggcccattcttctgaa
tttgagaatattgttgttagagatgaggagcaaaacgaattagaaaaattggctcagaca
tcatgccccctggaagttaaaggtggtcctccaagtaagcatggaaaagtatctattctc
atacagttgtatatttctcggggttcaattgattctttctccttaatatctgatgctgcc
tatataagtgctagcctgggccgtattatgagagctctatttgagatatgcttgcgcaga
gggtggtgcgaaatgacttcttttatgttggaatattgtaaggctgtggatcgtcaaatt
tggccccatcaacaccctctgagacaattcgacaaggatatttctttggatatactgagg
aagcttgaagaacgaggagccgacttggatcacctccatgaaatgcaggacaaagacatt
ggtgttttgatacgttatgcacctggaggaaggttggtgaaacaatacctgagcaacttt
ccatcagtgcaattatctgctactgtaagtccaattaccaggactgttctgaaggttgac
ttgctcataacaccagattttgtgtggaaggatcgctttcatggttcttcggaacggtgg
tggatacttgttgaggattcggaaaatgatcacatctaccattcagaactattcacacta
acaaagcggatggctagaagtgaagcacaaaagctaacattcacggtcccaatttttgaa
ccacatcctcctcaatattacattcgtgctgtttctgattcctggttgcaagcagaagct
ctgtatgctatatcttttcacaacctagcacttccagagggtcatacctctcacaccgaa
cttctagatctgaaacctcttcctgtgactgcacttggaaacaaggcttacgaggcatta
tatactttttcacacttcaatccaattcaaacccaggcgtttcatgtgctatatcacacc
gagaacaatgtccttttaggggctccaactggaagtggaaagacaatatctgctgagctt
gctatgcttcatctattcaattcccagcctgatatgaaggttatatacatagcgccacta
aaggctattgttcgagaaaggatgaacgattggaagaagcgtcttgtttctcaactcggc
aaaaagatggttgaaatgactggggattttacaccagatatgatggctcttatgtcagcg
gatattataatatcaactcctgagaagtgggatggtattagtcgtaactggcatagtaga
ggatatgtcacaaaggtaggactcgtgattttggacgaaattcacttgctgggagctgac
cgtggacccattcttgaggttattgtttctaggatgagatacatatcttcacaaacagaa
cgatcagttcgttttgttggcctttcaacagcattagcaaatgcacatgatttgtctgac
tggcttggtgtgggggaaaatggcttgtttaatttcaagcccagtgtgaggcctgtgcct
ctagaggttcatatccagggatatcccgggaagttttactgtccaaggatgaacagtatg
aataaacctacatatgcagctattagtactcattcaccaacaaaaccagttttaatattt
gtgtcatctcgtcgtcaaacaaggctgactgctctggatctcattcagtttgcagcttca
gatgagcacccaaggcagttcttgagcatggcagaagaagcgctacaaatgattgtttct
caggttgctgatcagaacttaaggcatacattgcaatttggcattggtttgcatcatgca
ggtttaaatgacaaagacagatctttggtggaagaactttttgccaataataagattcag
gtattggtttgcacgagcacattggcatggggagtaaatcttcctgcacatctggtcatt
attaagggaacagagttctatgatgcaaaatccaagcgatatgttgattttcctatcaca
gatatattgcagatgatgggtcgagcaggtcggccacagtatgatcaacatgggaaagct
gtcattcttgttcatgaacccaaaaagagcttctacaaaaagttcctgtacgagccattt
ccagttgagagtagtctgagagaacagctacatgatcacatgaacgcagaaatagtttcc
gggacaatatctcataaagaagatgctgtgcattatctcacttggacttatctgttccgt
agattgacagtcaatcctgcttattatggcttagtgggtactgaacatggaactctgagt
acatacttgtcaagcttagtgcaacacacctttgaggatttggaagatgctggttgcatc
aaaataactgaagatagtgtggctcctactatgctaggctctatggcatctcaatactac
cttaaatacatgacagtgtcaatgtttggttcaaacataggtccggatatatctttagaa
gttttccttctcatactatctggtgcatcagaatacgatgagcttcctgtgaggcataat
gaggaaaattttaatgaagcattgtcgaaaaaagttccttatgaggtggatcaaaattcc
ctggatgacccacatgttaaagctaatttacttttccaggctcacttttctcaactggaa
ttgccaattagcgactacataaccgacttgaagtcagttttggatcaaagtatacgcatc
attcgagccatgatagatatttgtgccaatagtggatggctttcaagtacgatgacatgt
atgcgtcttatgcaaatggtcatgcagggtttatggtttaacagagattctcatttgtgg
atgttgccacatatgactgatgatcttctcaatttgctactcaaaaacagcatatcaagt
gtacagcaactactggttcttcccaagcaacatctgcagtctgttgtaggaagttccact
gcatcatggctatatcaggatctacaacattttcccaatgttcaagtgaagctaaagatt
ccaagaaaagagcccaacagtctaagcttacctggtcttaacattagactggaaaaaaca
aaccttcaaaacaaatcatctcgagcatttactcctcgatttccaaaggtcaaggaggaa
gcatggtggctgatccttggtaacacctcgacctctgaattatatgccatgaaacacgtt
tctttttctgaccggttagtcactcacatgaagttgccatcaactacattcactctcaag
ggaatgaaaatgatactagtatcggattgctatcttgggtttgaacaagaatacactgtt
gaagatcttattgggactcaacaacttgaagccgggagataa
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integrated database retrieval system
