Daucus carota (carrot): 108214239
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Entry
108214239 CDS
T05350
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108214239
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108214239
Membrane trafficking [BR:
dcr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
108214239
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108214239
Exosomal proteins of bladder cancer cells
108214239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
108214239
NCBI-ProteinID:
XP_017241607
UniProt:
A0AAF1AQZ3
LinkDB
All DBs
Position
3:12710287..12716606
Genome browser
AA seq
1215 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHNKRPWILASLHSGVIQLWDYRVGTLIDRFDEHDGPVRGVHFH
NSQPLFVSGGDDYKIKVWNYKQHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHARQDIIVSNSEDKSIRVWDSTKRTGLQTFRREHDRFWILVCHP
EMNLLAAGHDSGVIVFKLERERPAFSVSGDCLYYVKDRFLRFYEYSTQKETQVIPIRRPG
STSLNQGPKTLSYSPTENAVLISSDLEGGSYELYIIPKDSFGRGDSVQEAKRGLGGSAVF
VARNRFAVLEKSSNQVLVKNLKNEIVKKSALPVPTDAIFYAGTGNLLCRAEDRVVIFDLQ
QRIILGDLQTSFVRYVVWSNDMENVALLSKHSVVIADKKLVHRCTLHETIRVKSGAWDDN
GVFIYTTLTHIKYCLPNGDSGIIKTLDVPVYITKIVGNTIFCLDRDGKNRPIIIDSTEYV
FKLCLMRERLEQVMTMIRKSDLCGQAMIAYLQQKGFPEVALHLVKDERTRFNLALESGNI
QIAVASAKEINEKDHWYKLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNLDKLAK
MLKIAEVNNDVMGQFHNALYLGNVQERVKILESAGHLPLAYITASVHGLHDVAERLAAEL
GDKVPPLPKKRPASLLMPQPPIVCGGDWPLLMVTKGILEAGLDNIGKSSQEEYMDASEAD
WGEDLDLVDVENIQNGDISLVLDDEEIHEENDGGWDLEDLELPPDLDTPKTSNARSSVFI
APAAGMPVSQIWVQKSSLAAEHAAAGNFDTAMRLLTRQLGIRNFAPLKSLFIDLHTGSHT
YLRAFSSSPVISLAIEKGWSEAASPNVRSPPSLVFSFTQLEEKLKAGYKATTAGKFTEAL
RLFQGILHTIPLIVVDTRREVDEVKELIIIVKEYVLGLQIELKRRETKDNPVRQQELAAY
FTHCNLQLPHLRLALLNAMTVCYKAKNLNTAANFARRLLETNPSAENQAKTARQVLQAAE
RNMNDASQLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCSSRFVPSQEGQICTVCDLAIV
GSDASGLLCCPSQTR
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgttaacgaaattcgagaccaagagtaatagagtaaaaggactgagctttcataacaag
aggccttggatcttggctagtttacatagtggagtgatccagctttgggattatagagtc
ggaacgcttattgatcggttcgatgagcacgatggacctgttcggggcgtgcattttcac
aattctcagccgcttttcgtttccggaggagatgattacaagattaaggtgtggaattac
aagcagcataggtgtttgtttacacttcttggacatcttgattacatccgtactgtacaa
tttcatcacgagtatccctggattgttagtgctagtgatgaccagactataaggatctgg
aattggcagtctcgtacctgtatttctgtgttgacaggtcacaaccattatgttatgtgt
gcattgttccatccaaaagaggaccttgttgtatcagcttcgttagatcagacggtgcga
gtttgggatattggtgctttgcggaagaagacagtttcacctgctgatgatatcctgcgt
ttgagtcagatgaatacagatttttttggtggggttgatgctgttgttaagtatgtcttg
gaaggccatgaccgaggagtcaactgggcttcattccatcctactctccccctcattgtc
tctggagcagatgatcgccaggttaaaatttggagaatgaatgatacaaaggcctgggag
gttgataccttgagagggcacatgaacaatgtgtcatgtgttcttttccatgcgaggcag
gatattatagtttcaaattcagaggataagagcattcgtgtgtgggattctactaaaagg
accgggctccaaacatttcgcagagagcatgacagattttggattcttgtgtgccatcct
gagatgaatcttctggcagcaggccatgatagcggtgtgatagtgttcaagctggagaga
gaacggcctgccttttctgtcagcggagattgtctgtactatgtgaaagaccgttttttg
cgcttctatgaatactcaacccaaaaagaaacccaagttatacctattcgtaggcctggt
tcaactagcttgaaccaaggacctaagactctttcttatagccctaccgagaatgcagtt
ttgatcagctcggacttggaagggggatcttatgaactatatattatacccaaggacagt
tttggtagaggcgattcagttcaagaggcaaaaagaggtttagggggttcagcagtattt
gttgctcgaaacagatttgcggtgcttgagaaaagcagtaatcaagtgttagtcaagaat
cttaaaaatgaaattgtcaagaagagtgcccttcctgttcctactgatgcaattttttat
gccggcactggaaacttgctatgcagggcagaggatagagttgtaattttcgatctccaa
caaaggattattcttggagatcttcaaacttcttttgttaggtatgttgtttggtcaaat
gacatggaaaatgttgccttattaagcaaacattctgttgttattgctgataagaagctc
gtgcatcgatgcactcttcatgagacaattcgagttaaaagtggagcctgggatgacaat
ggtgtcttcatctacacaacattgacccacattaagtattgccttccaaatggggatagt
ggaattataaagacccttgatgtcccggtttacatcacgaagatcgttggaaacacaata
ttttgtttggaccgagatgggaaaaatcgtccaattatcatcgattcaactgaatacgtg
tttaaactttgtctgatgcgggagagacttgaacaggttatgaccatgattaggaaatca
gacctttgcgggcaagccatgatcgcttaccttcaacagaaggggtttcctgaagttgca
cttcatcttgtaaaggatgagcgaactcgttttaatctggcactggaaagcgggaacatc
cagatagcagttgcttctgccaaagagattaatgagaaagatcactggtacaaattgggg
gtagaggcacttcgtcaaggtaatgcgggtatcgtggaatatgcatatcagagaacaaaa
aattttgaaaggttatctttcctctatcttattacaggaaacttggataagcttgctaaa
atgctaaaaattgctgaggttaataatgatgttatgggtcaatttcataatgcgttatac
ctgggtaacgtccaggagcgcgttaagattttggagagtgcgggtcatctgcctctggca
tatattactgcttctgttcatgggctccatgatgttgctgagcgtcttgctgctgaactg
ggtgataaagttcctcctttgccaaaaaagagaccagcatctcttttaatgccccaacct
cctattgtatgtggtggcgattggccattattgatggtcacaaaaggcatcttggaggct
ggtcttgataatattggaaagagcagccaggaagaatatatggatgcctccgaagcagat
tggggtgaagacctggatcttgtggacgttgagaacatccaaaatggggacatcagcttg
gttcttgatgatgaggaaatacatgaagaaaacgacgggggatgggatcttgaggatctt
gaacttccacctgatcttgatacaccaaaaactagtaatgcgcgctcctctgtatttatt
gcgcctgctgctggaatgcccgtgagccaaatttgggttcaaaagtcttctcttgctgct
gaacatgctgctgctggcaattttgacactgcaatgcgtttgctaacacggcaactggga
ataaggaattttgctcccttaaaatctttatttattgatctccatacgggcagccatact
tatttacgtgcattctcctcttctcccgtcatctcattggcaatcgagaagggatggagt
gaggcagccagccccaatgtgcggagcccaccttcactggtgttcagtttcacacagttg
gaagagaagctcaaggcaggatacaaagccacaactgctggaaaatttactgaagctttg
cggcttttccagggcattcttcataccatcccgcttattgttgtcgatacacgtcgagag
gtggatgaagtaaaggaattgatcatcattgttaaggaatatgttcttggtttacagata
gagctcaaaagaagggaaacaaaggacaatccagttcgtcaacaagagctagcagcatac
tttactcattgtaatcttcagctgcctcacttgagacttgctttactgaatgctatgact
gtctgctacaaggcgaaaaatctaaacacagcagccaattttgccaggcgacttttagag
accaatccatccgctgaaaaccaagccaaaacagcccgccaagttttgcaggctgccgaa
aggaacatgaatgacgcctctcagctgaattatgactttagaaatccgtttgtggtttgt
ggagcaacgtatgttcctatataccgaggacaaaaggatgtcagttgcccttactgcagc
tcacgctttgtgccatctcaagaagggcagatttgtactgtttgtgacctagccattgtt
ggttctgacgcttctggtttactctgctgtccctcgcaaaccagataa
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integrated database retrieval system
