Daucus carota (carrot): 108214273
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Entry
108214273 CDS
T05350
Name
(RefSeq) vacuolar protein sorting-associated protein 35B
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108214273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108214273
Membrane trafficking [BR:
dcr04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
108214273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
108214273
NCBI-ProteinID:
XP_017241683
UniProt:
A0AAF0WSS7
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All DBs
Position
3:complement(52441664..52451464)
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AA seq
792 aa
AA seq
DB search
MIGDGGVDEEEKYLAAGIAGLQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHK
YYELYMRAFDELRKLEMFFREETKRGCSTIELYELVQHAGNILPRLYLLCTVGSVYIRSK
EAPAKDVLKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVSDAVEFV
LQNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLGQIEGVDLDLYKDIVL
PRILEQVVNCKDELAQYYLMDCIIQVFPDDYHLQTLETILGACPQLQPSVDIKTILSRLM
ERLSNYAASSAEVLPEFFQVEAFAKLNSAIGKVIEAQVDMPIDGVVTLYSSLLTFTLHVH
HDRLDYVDQILGACVGKLSVVGKLEDSKATKQIVALLSAPLEKYNDIDTALKLTNYPRVL
EFLDQGTNKVMANVIIQTIMKNKTCISSADKVEALFELIKGLIKDLDGNLDEVDDEDFNE
EQNAVARLIQMLYNDDPKEMLKIICTVKKHIMVGGAKRLPFTVPPLIFCSLKLVRRLQSQ
EENAGEEEEDASVTPKKIFQILNQMIEALSVIPVPELALRLYLQCAEAANDCDLEPVAYE
FFTQAYILYEEEISDSKAQVTAIHLIIGSLQRLHVFGVENRDTLTHKATGYSAKLLKKPE
QCRAVYACSHLFWVDDQDSIKDGERVMFCLKRALRIANAVQQMATATRGSSGSVMLFIEI
LNKYLYFFEKGNPQVTVASIQGLIELITTEMQSDNTTSDPAADAFFASTMRYIQFQKDKG
GAVGEKYEPIKT
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgataggggacggaggtgtagatgaggaagagaaatacctagccgctgggatcgccggc
cttcaacagaatgctttctatatgcatcgtgctctcgactctaacaatctcaaggatgca
cttaaatactccgcccagatgctctccgagcttcgcacttccaggctttctcctcacaaa
tactacgaactctatatgcgagcatttgatgaactccgtaagctcgagatgttcttccgt
gaagaaactaaacggggttgctctactattgagctctacgaacttgtccagcacgccggt
aacatcttacccaggctttatcttctctgtacagtgggatccgtgtatatcaggtccaag
gaggcccctgccaaggatgttttgaaagaccttgtggaaatgtgtcggggaatacaacac
cctctacgtggtcttttccttaggagttatttatcccaagttagcagggataaattacct
gatattggttccgagtacgaaggcgatgcagatactgtttcagatgctgtagagtttgta
cttcagaattttacagaaatgaacaaactttgggtccgtatgcaacatcagggacctgct
cgggagaaggagaaaagagagaaggaaagaagcgagcttcgtgatcttgtaggaaaaaat
ttgcatgttctcggtcagatcgaaggtgttgaccttgatttgtataaagatattgtgctt
ccaagaatcttggagcaggtcgtgaattgtaaagatgagcttgcacaatactatttgatg
gattgcatcattcaggtgtttcctgatgattatcacttgcaaacactagaaacaatactg
ggtgcctgcccccagcttcagccatccgttgatatcaaaactattctttctcgattaatg
gagaggctctcaaattatgctgcatcaagtgcagaagttttacctgagttcttccaagtg
gaagcctttgcaaaactgaacagcgctataggaaaggtgatagaagctcaagttgacatg
cctattgatggagttgtaacattatattcttctctcctgacgtttactcttcacgtccac
catgaccgtcttgactatgtggaccaaatattgggtgcatgtgtaggtaaactttctgtc
gttggaaagcttgaagatagtaaagccacaaaacagattgttgctcttctaagtgctcct
ttggagaaatataatgatatagacactgcattgaaacttaccaactacccccgtgtgttg
gagtttctagaccaaggaactaacaaagtgatggctaatgtgatcattcaaactatcatg
aaaaacaagacttgcatctcctcggcagacaaggttgaagcactttttgaactaataaaa
ggactcattaaagatttggatggaaatcttgatgaggttgatgatgaagattttaatgag
gagcagaatgctgttgcacgcctaatccagatgctatataatgacgatccgaaagagatg
ttaaagatcatttgtactgtgaaaaagcatatcatggtaggaggagcgaagcgtcttcct
tttactgtacctccccttattttttgttctcttaagctggttagacggctgcagagccag
gaagaaaatgctggtgaagaagaggaagatgcctcggtgacaccaaagaaaatttttcag
attctgaaccagatgattgaggctctatctgtaattcctgtacctgaactggcactgcgg
ttatacctacaatgtgctgaggcagccaatgactgtgacctagagcctgtagcatatgaa
tttttcacccaagcgtatatactctatgaggaagaaatatcggattcgaaggcccaagtg
acagcaatacacctaataataggttctctgcaaaggttacatgtctttggtgttgaaaat
agggataccctaacacataaggctactgggtactctgcaaagcttttgaagaagcctgag
cagtgtagagctgtttatgcatgctcacatctcttttgggtggatgatcaagatagcatc
aaagatggggagagggtcatgttttgcttaaagcgtgcgttgagaatagcgaatgctgtt
caacaaatggctactgcaacacgaggtagcagtggatcggtcatgctctttattgagata
ctgaacaagtatctctatttttttgagaaggggaacccacaggtcacagttgcttcaatt
cagggactgattgaattgatcacaactgaaatgcaaagtgataataccacatcagatcca
gctgcagatgctttctttgccagcacaatgcggtacattcagttccaaaaggacaaaggt
ggagcagtaggagagaaatatgagcccattaagacatga
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