Daucus carota (carrot): 108214288
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Entry
108214288 CDS
T05350
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108214288
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108214288
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
Motif
Other DBs
NCBI-GeneID:
108214288
NCBI-ProteinID:
XP_017241710
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All DBs
Position
3:47086577..47092910
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AA seq
527 aa
AA seq
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MSNPNQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVE
FVELNQAINMVSYYASSSEPASIRGKHVYIQYSNRHEIVNNKGPGDVPGNVLLVTIEGVE
AGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETALSAREALDGRSIPRYLL
PEHVGSCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNSTAIEGFVQPVVGPDGKKKEP
ESNVLLASIENRIYDVTVDVLNTVFSAFGTVQKIAIFEKNATTQALIQYPDINIAAAAKD
ALEGHCIYDGGYCKLHISYSRHTDLNVKAFSDKSRDYTVPESGFAAALPAGATVWQNPHA
APVFTASEFVGVNYAQPQGPHGHVNYMQPLQGPPGQGPPGQGPPGQGPPGQGPPGQGPPG
QAPSWDPAMQLSGPSFVSGSSTLPGQTYGPTSGQVYNPMGSPAGSSPYGPPSGQVYNPMS
SPAGSSPLGQKTQVNPSSSASGGQPGNPSNMQHGSSSPRNHHPPYYR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccctaatcagcctcaatttcggtacacacagacgccatctaaggtgcttcac
ttgcgtaaccttccatgggaatgtattgaagaagagctcgttgagctctgtaagcctttt
ggcaagatcgttaacactaagtgcaatgtcggcgctaatcgcaatcaagccttcgtcgaa
ttcgtggagcttaatcaggccattaatatggtttcatattatgcttcatcttcagaacct
gcatctattcggggtaaacatgtttacatacaatattcaaacagacatgaaattgtcaac
aataagggtccaggtgatgttccgggaaatgtgttgctggtaaccattgagggtgtagaa
gctggtgacgtaagcattgatgtaattcatttggtattctcagcttttggatttgtgcac
aagattgctacttttgagaaggcagcaggatttcaggcgctgatccaatttactgatgct
gagactgctctttcagcaagagaagctttagatggcagaagtattccaaggtacttgctt
ccagaacatgttggttcttgcaatctgcgcatctcatattcagctcacaccgatctaaac
atcaaattccaatctcaccgtagccgggactatacaaatccatatcttcctgtaaattca
actgcaattgagggatttgtccagcctgttgtaggtcctgatggaaagaagaaagaacct
gagagtaatgtactacttgcttcaattgaaaataggatctatgatgtcactgtcgatgtt
cttaatacggtattctctgcatttggtacggttcagaaaattgctatatttgagaagaat
gcgacgactcaggctctgattcagtatcctgatatcaatattgcagccgcagctaaagat
gctttagaggggcactgcatatatgatggtggctactgtaagcttcatatatcatactct
cgtcatactgatctgaatgtaaaggccttcagtgacaaaagtagagattatacagtacca
gagtcgggttttgctgctgctctgccagctggagcaacagtatggcagaatcctcatgct
gcaccagtttttaccgccagcgaatttgttggtgttaattatgcgcagcctcaaggccct
catggacatgtcaattacatgcagccgcttcaaggccctcccggacagggccctcccgga
cagggtcctcccgggcaaggacctcctggacagggtcctcccgggcagggtcctcctgga
caagctccatcttgggatccagcaatgcagctgagtggaccatcctttgtttcaggctcc
agcacattacctggacaaacatatgggcctacctctggtcaggtttataatccaatgggc
tcacctgctggttcctcaccatacgggcctccctctggtcaggtttataatccaatgagc
tctcctgctggttcctcaccccttggacaaaagacccaagtcaatcccagttcttctgca
agtggaggtcagcctgggaatccgtcaaatatgcaacatggtagttcctcccctcgtaac
caccacccaccttattacagatag
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