Daucus carota (carrot): 108214290
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Entry
108214290 CDS
T05350
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108214290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108214290
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108214290
mRNA degradation factors
5'-3' decay
Decapping complex
108214290
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
108214290
NCBI-ProteinID:
XP_017241712
UniProt:
A0AAF0WKY8
LinkDB
All DBs
Position
3
Genome browser
AA seq
814 aa
AA seq
DB search
MERSDSNELNHFSSSFTSDAALFDASQYAFFGQDGAQGTVLRGLEDEANDASVLGFGDDE
YHLFDKEQESGIGSLSDVDDLATIFSKINKVVTGPRHPGVIGDRGSGSFSRESSSAAEWS
QELDFPDWLDQHISDTESFQESKRWSSQPHLSSVLVPESKPIYRTASYPLQQHQQQYPIE
TNLESESAFSSYPPPGGISQLSSPHHHPQHLKLSSLGSGPQLPFSTPHLSPLSNSSIHMT
GVPHGYRYSGNIPHLLSPDISLGSGSQNYWNNRAGLLLGDQSSVMNNILQQQFPHQSNLV
SPHLMSQQQQQQHHRLHLPIQPSLSRYSSLQSQFYNALPSPPSRLRKHKSADMRDQRPKV
SQKGKHAWLSQQSSDASQQSDYNRPQFRSKYMTADEIEGILKIQHAATQSSDPYIDDYYH
QARLEKKSTETRSKLKFCPARLKEPSSRSRNSSDSQPHLQVDSHGRVSFSSIRRPRPLLE
VDPPSSASGEGSAEQKMSERSLEQEPMLAARITIEDGLRVLFDVEDIDRFLQYNQPQDGG
TQLRRRRQILLEGLAASVQLADPLGRSGTSAGLNPKNDSVFLWLVFLPKGRKLISKYLQL
LFPGGELARIVCMTIFRHLRFLFGGLPSDPEAVETVSSLAKMVTKCVSGMDLNSLSACIA
AVVCSSEQPPLRPLGSSAGDGASVMLICVLERATQLLNNPQSSSNRVPPNPVLWQASFDA
FFGLLTKYCLGKYDRIMQSICAQNPQPSPDVINAEAARAISREMPVEVLRASLPHTNDRQ
RKLLLDFAKRSTPVSGISGHSGSSGLVTPEFVRG
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgattctaatgaattaaatcacttttcttcaagttttacttcagatgct
gcactatttgatgcatcacaatatgcattttttggacaagatggagcgcaaggcactgtg
ctgagaggactggaagatgaggcgaatgatgcatctgtacttggttttggcgatgatgaa
tatcatttgtttgataaggagcaggaatcaggtataggatctctctctgatgtggatgac
ctggcgacaatattttctaagataaacaaagttgtcactggacctagacatcctggagtt
atcggtgatcgcggatctggttctttttcaagggaaagttcctctgctgcagaatggtca
caggaattggatttccctgactggttagatcagcatatatctgacacagagagcttccag
gaaagcaaaagatggtcttcccaaccacatctctcttctgtccttgttccggagtcaaaa
cctatatacaggacagcttcatacccgctgcagcaacatcagcaacaatatcctattgaa
actaatttagagtcagaatcagctttcagttcataccctcctccaggtggcatatctcaa
ttgtcttcacctcaccaccatccgcaacacctgaaattgtcatctctgggtagtgggcct
cagttacccttctctacgccacacctctctcccttgtctaactccagtattcatatgact
ggtgtgcctcatgggtaccgttatagtggaaatatccctcatttactctcacctgatatt
tctcttggtagtgggtcacaaaattactggaacaaccgtgcagggctacttcttggggat
cagtccagtgtcatgaataacattttgcaacagcaatttccgcatcaaagtaatttggtt
tccccgcatttaatgtcacagcagcagcagcaacagcaccataggctccatcttccaatt
caaccatctttatcacgttattcatctctgcaatcccagttctataatgcccttccttct
ccaccatcacgtctgagaaaacataaatcagctgatatgagggatcaacgacctaaagtt
tcacaaaaaggtaaacatgcgtggttatctcaacaaagttctgatgccagccagcaaagt
gattacaatcggccacaatttagatccaaatatatgactgctgatgaaatagaaggtatt
cttaaaatacagcatgccgcaacacagagcagtgatccttatatagatgactactaccac
caagctcgtcttgaaaaaaaatctactgaaacaaggtcaaaactaaagttctgcccagct
cgtttaaaggagccctcttctcgatcacgtaatagttcagactcccagcctcatctccag
gttgattctcatggaagggtttcattctcttctattcgtaggcctcgtcctctccttgaa
gtcgaccctccttcctctgcttctggcgagggtagtgctgaacagaagatgtcggagagg
tctttggaacaggagcccatgctggctgcgagaataacgattgaggatggccttcgagtc
ctatttgatgtagaggacattgataggtttctacaatataatcagccccaagatggtggg
actcaactgaggcggaggcgccagatcctgttggaaggcttagcagcatcagttcagctt
gctgacccacttgggagaagtggaacatcagctgggctaaatcccaagaatgacagtgtg
ttcttatggctcgtttttcttccaaaaggcagaaagcttatttcaaaataccttcagctt
ctttttcctggtggtgagctggcccgaatagtttgcatgaccatctttcgtcacttaagg
ttcttatttggcggccttccttctgatccagaagcagtcgaaactgtctctagtcttgca
aagatggttaccaaatgtgttagtggcatggaccttaattctctgagtgcatgtattgct
gctgtggtttgttcatcagagcagccaccccttcgtccacttggcagttctgctggagat
ggagcatctgttatgttgatatgtgtcttagagagggcaacacagctgttaaacaatccg
cagtcctctagcaaccgtgttccgccgaatcctgtcctgtggcaggcttcatttgatgcc
tttttcggtcttcttactaagtattgcctgggaaaatatgacaggataatgcagtccata
tgtgcacaaaacccccaacctagcccagatgtcattaatgcagaggcagcaagagctata
agcagagaaatgcctgtagaagttctacgtgctagtcttccccacacaaatgatcggcag
aggaagttactactggattttgctaagcgctccacaccagtaagtggaatcagtggtcat
agtgggagcagcggtctcgttactccagaatttgtacggggttag
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